[Chimera-users] Fwd: Coulombic Surface Coloring

Elaine Meng meng at cgl.ucsf.edu
Mon May 4 12:41:05 PDT 2009


Hi Francesco,
If you look at Chimera documentation using the Help menu in Chimera it  
should match your software pretty well.  If you go onto the Web, you  
may be looking at documentation that is for a different version of  
Chimera than you have installed.

To see what is new since the last production release, you can always  
go to the Chimera home page, and then click the link "what's new" (on  
the same line as "daily builds" in the quick links section on the  
left).  Home page:
<http://www.cgl.ucsf.edu/chimera/index.html>

For electrostatic coloring you can use either of the following, it's  
up to you:

- use "Electrostatic Surface Coloring" with a map from DelPhi, GRASP,  
APBS, or UHBD
<http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/filetypes.html#esp>
<http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/surfcolor/surfcolor.html 
 >

- use "Coulombic Surface Coloring" in a daily build version of Chimera
<http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/coulombic/coulombic.html 
 >

Elaine
-----
Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
                      http://www.cgl.ucsf.edu/home/meng/index.html








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