[Chimera-users] define attribute error

Roberto Kopke Salinas roberto.kopkesalinas at gmail.com
Fri May 22 08:12:18 PDT 2009


Dear Eric,

Thank you so much.
This solved the problem.
Best,


Roberto

On 5/21/09, Eric Pettersen <pett at cgl.ucsf.edu> wrote:
> Hi Roberto,
> 	The atom specifiers you are using (the first of the two data columns)
> are incorrect.  For example, ":377.000000" selects residue 377 in
> chain 000000, which does not exist unless you have a spectacularly
> unusual structure.  :-)  You probably either want just ":377" (all
> residues numbered 377) or something like ":377.A" (residue 377 in
> chain A).
> 	Atom specifiers are discussed in detail here:
> http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/atom_spec.html
>
> --Eric
>
>                          Eric Pettersen
>                          UCSF Computer Graphics Lab
>                          http://www.cgl.ucsf.edu
>
>
> On May 21, 2009, at 2:02 PM, Roberto Kopke Salinas wrote:
>
>> Dear All,
>>
>> I am trying to color code a structure according to HetNOE. When I
>> load the attribute list using  "Define Attribute"  via the
>> "Structure Analysis" menu the program does not automatically  open
>> the "Render by Attribute" menu. If I click and open the "Render by
>> Attribute" menu, the program does not show my file in the attributes
>> list for residues.
>>
>> Does anyone have an idea of why this happen?
>> I have pasted my attribute's list below.
>>
>> Thank you,
>>
>> Roberto
>>
>> attribute: teste
>> recipient: residues
>>     :377.000000    0.842818
>>     :378.000000    1.273292
>>     :379.000000    0.763398
>>     :384.000000    0.852818
>>     :387.000000    0.999787
>>     :388.000000    0.572572
>>     :389.000000    1.016109
>>     :393.000000    0.950908
>>     :397.000000    0.761818
>>     :399.000000    0.712411
>>     :402.000000    0.388721
>>     :403.000000    0.495060
>>     :408.000000    0.460664
>>     :411.000000    0.973597
>>     :412.000000    1.036187
>>
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>
>



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