[Chimera-users] define attribute error
Roberto Kopke Salinas
roberto.kopkesalinas at gmail.com
Fri May 22 08:12:18 PDT 2009
Dear Eric,
Thank you so much.
This solved the problem.
Best,
Roberto
On 5/21/09, Eric Pettersen <pett at cgl.ucsf.edu> wrote:
> Hi Roberto,
> The atom specifiers you are using (the first of the two data columns)
> are incorrect. For example, ":377.000000" selects residue 377 in
> chain 000000, which does not exist unless you have a spectacularly
> unusual structure. :-) You probably either want just ":377" (all
> residues numbered 377) or something like ":377.A" (residue 377 in
> chain A).
> Atom specifiers are discussed in detail here:
> http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/atom_spec.html
>
> --Eric
>
> Eric Pettersen
> UCSF Computer Graphics Lab
> http://www.cgl.ucsf.edu
>
>
> On May 21, 2009, at 2:02 PM, Roberto Kopke Salinas wrote:
>
>> Dear All,
>>
>> I am trying to color code a structure according to HetNOE. When I
>> load the attribute list using "Define Attribute" via the
>> "Structure Analysis" menu the program does not automatically open
>> the "Render by Attribute" menu. If I click and open the "Render by
>> Attribute" menu, the program does not show my file in the attributes
>> list for residues.
>>
>> Does anyone have an idea of why this happen?
>> I have pasted my attribute's list below.
>>
>> Thank you,
>>
>> Roberto
>>
>> attribute: teste
>> recipient: residues
>> :377.000000 0.842818
>> :378.000000 1.273292
>> :379.000000 0.763398
>> :384.000000 0.852818
>> :387.000000 0.999787
>> :388.000000 0.572572
>> :389.000000 1.016109
>> :393.000000 0.950908
>> :397.000000 0.761818
>> :399.000000 0.712411
>> :402.000000 0.388721
>> :403.000000 0.495060
>> :408.000000 0.460664
>> :411.000000 0.973597
>> :412.000000 1.036187
>>
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>> Chimera-users at cgl.ucsf.edu
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>
>
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