[Chimera-users] rmsd between two ligands

[Elaine Meng]

Hi Miriam,
Yes, the command "rmsd" does exactly that.  Syntax is the same as for  
"match" but unlike that command, it does not move anything, just  
calculates the RMSD in the current positions.

<http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/rmsd.html>

Best,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Apr 30, 2010, at 7:34 AM, Miriam Gochin wrote:

> Is there a way in chimera to obtain an RMSD between two structures  
> without matching them, ie. just to know the difference between them?
>