[Chimera-users] File conversion: strange behaviour

[George Tzotzos]

Hi everybody,

I'm attaching a  pdb file <3og.pdb>. This file on conversion from amber11 (ANTECHAMBER) yields 3og.mol2 which Chimera renders as per snapshot below. The two big blue spheres should be oxygen atoms. Selecting the molecule and trying to colour by atom has no effect other than colouring the atoms that are adjacent to the blue spheres.

Any explanation for this behaviour?

Many thanks and best regards

George
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