[Chimera-users] SDF Partial Charges

[Nancy]

Hello,

I am performing protein-ligand docking simulations, and the preferred ligand
input file format is Mol2.  I obtained some of my ligand structures from
PubChem in SDF format, and I noticed that the SDF files contain partial
charges ("PUBCHEM_MMFF94_PARTIAL_CHARGES").  Is there a way to preserve the
charges in Chimera when converting to Mol2 file format?

Thanks in advance.

Nancy
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