[Chimera-users] rmsd between two ligands

[Miriam Gochin]

Thanks!

Miriam Gochin
Touro University - CA
miriam.gochin at tu.edu
707-638-5463
________________________________________
From: Elaine Meng [meng at cgl.ucsf.edu]
Sent: Friday, April 30, 2010 10:00 AM
To: Miriam Gochin
Cc: chimera-users at cgl.ucsf.edu
Subject: Re: [Chimera-users] rmsd between two ligands

Hi Miriam,
Yes, the command "rmsd" does exactly that.  Syntax is the same as for
"match" but unlike that command, it does not move anything, just
calculates the RMSD in the current positions.

<http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/rmsd.html>

Best,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Apr 30, 2010, at 7:34 AM, Miriam Gochin wrote:

> Is there a way in chimera to obtain an RMSD between two structures
> without matching them, ie. just to know the difference between them?
>