[Chimera-users] salt bridges

[Elaine Meng]

Hi Simon,
The instructions you found are for the findhbond command, whereas it sounds like you are looking at the FindHBond graphical interface.  

You could use the findhbond command (show Command Line by choosing it from the Favorites menu), or in the FindHBond graphical interface, turn on the option to "Only find H-bonds" with setting "with both ends selected."

Command instructions:
<http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/findhbond.html>

Graphical interface instructions -- click Help button on the dialog, or view here:
<http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbond.html>

I guess you were looking at this earlier post,
<http://plato.cgl.ucsf.edu/pipermail/chimera-users/2009-February/003577.html>

I hope this helps,
Elaine


On Apr 6, 2011, at 11:10 AM, Simon Sham wrote:

> Hi,
> I have tried to find out salt bridges with chimera. According to the archive:
> "findhbond selRestrict both saveFile ~/mydir/myfile"
> 
> 1. I could not find "selRestrict" under "FindHbond".
> 
> I am using the latest version of CHimera.
> 
> Thanks for your help in advance.
> 
> Best,
> Simon Sham
>