[Chimera-users] help with error message

[Susan Tsutakawa]

Thanks.  Will do that.

Susan


On Nov 28, 2011, at 2:02 PM, Elaine Meng wrote:

> HI Susan,
> The better approach to reporting Chimera problems is to use "Help... Report a Bug" in the Chimera menu and attach your input file (and include your email address if you would like feedback).  Just showing the error message is usually not enough information.
> Thanks,
> Elaine
> ----------
> Elaine C. Meng, Ph.D. 
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> 
> 
> On Nov 28, 2011, at 12:52 PM, Susan Tsutakawa wrote:
> 
>> I am opening up a pdb that has been generated after MD simulations. Waters have been removed.
>> 
>> I am getting an unusual error.  I have two pdb files that were generated similarly, but only one gives me the error.
>> 
>> Traceback (most recent call last):
>> File "/Applications/Chimera.app/Contents/Resources/share/chimera/tkgui.py", line 343, in openPath
>>   mols = chimera.openModels.open(path, type=ftype)
>> File "/Applications/Chimera.app/Contents/Resources/share/chimera/__init__.py", line 1541, in open
>>   models = func(filename, *args, **kw)
>> File "/Applications/Chimera.app/Contents/Resources/share/chimera/__init__.py", line 770, in _openPDBModel
>>   errOut=errLog)
>> error: radius must be positive
>> Error reading bfactor-911_changed.pdb:
>> error: radius must be positive
>> 
>> File "/Applications/Chimera.app/Contents/Resources/share/chimera/__init__.py", line 770, in _openPDBModel
>>   errOut=errLog)
>> 
>> If someone can help, I would appreciate it.
>>