[Chimera-users] APBS

[Anjana Ramnath]

thanks so much Elaine! let me just say that Chimera user support is waayy
better than any other popular graphics program ive come across! youve got a
chimera fan here now. :)

On Fri, Jan 6, 2012 at 1:53 AM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Anjana,
> After showing a surface, you can either
>
> (A) open an electrostatic potential (ESP) map previously calculated with
> some other program (DelPhi, Grasp, UHBD, APBS) in Chimera and then use it
> to color the surface with "Electrostatic Surface Coloring" (in  menu under
> Tools... Surface/Binding Analysis) or command "scolor"
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/filetypes.html#esp>
> <
> http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/surfcolor/surfcolor.html
> >
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/scolor.html>
>
> or
> (B) use the "Coulombic Surface Coloring" tool (in same menu as above) or
> command "coulombic" to calculate Coulombic ESP and color the surface based
> on those values
> <
> http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/coulombic/coulombic.html
> >
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/coulombic.html>
>
> ... for example, as in this tutorial:
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/surfprop.html>
>
> Best,
> Elaine
> ----------
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
>
> On Jan 5, 2012, at 12:14 PM, Anjana Ramnath wrote:
>
> > thanks so much for your prompt response! well actually, i was wondering
> if there was a way to show the electrostatic surface in chimera?
> >
>
>
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