[Chimera-users] Electrostatic potential

[George Tzotzos]

I have experience with APBS. PyMol has an APBS plugin. You can also use APBS using AutoDock Tools (http://autodock.scripps.edu/resources/adt)

However, I suggest that you visit first the APBS website. There's plenty of information there (http://www.poissonboltzmann.org/apbs/)

Regards

George

On Jun 26, 2012, at 3:48 PM, cantini at cerm.unifi.it wrote:

> 
> Regarding these programs
> Do you know how they worked and which are the best? I tried to installed them but without success .
> 
> Francesca
> 
> sette at uniroma2.it ha scritto:
> 
>> 
>> 
>> Chimera don't make calculations of electrostatic potential.
>> You can use other softwares for this, like APBS or Delphi.
>> 
>> Marco
>> 
>> 
>> George Tzotzos <gtzotzos at me.com> ha scritto:
>> 
>>> Hi everybody,
>>> 
>>> Assuming that one knows the precise residues constituting a binding site, it is possible to calculate the electrostatic potential of these residues only? If yes, how?
>>> 
>>> Thanks for any advice
>>> 
>>> George
>>> _______________________________________________
>>> Chimera-users mailing list
>>> Chimera-users at cgl.ucsf.edu
>>> http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
>>> 
>> 
>> 
>> 
>> Dr.Marco Sette, Ph.D.
>> 
>> Department of Chemical Sciences and Technology
>> University of Rome, "Tor Vergata"
>> via della Ricerca Scientifica, 00133, Rome, Italy
>> e-mail:        sette at uniroma2.it
>> e-mail:        m77it at yahoo.it
>> Tel.:          +39-0672594424
>> Fax:           +39-0672594328
>> 
>> www.rete29aprile.it
>> 
>> 
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