[Chimera-users] vop morph map color

[Steve Reichow]

Thank you Elaine!  In this case the first suggestion, using a
semi-colon separator worked perfectly. Thanks again!

On Thu, Feb 28, 2013 at 12:25 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Steve,
> To avoid displaying intermediate states, you can combine commands on one
> line with semicolon separators, for example:
>
> vop morph #0,1; volume #2 color khaki
>
> See the general information on command files:
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/indexcommand.html#cmdfile
> >
>
> Another possibility in this case is to create the morph volume, color it
> as desired, and hide it before starting recording (before the "movie
> record" command), and just redisplay it later in the movie content portion
> of the script.
>
> I hope this helps,
> Elaine
> ----------
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> On Feb 28, 2013, at 8:20 AM, Steve Reichow wrote:
>
> > Hi,
> > I am writing a movie script that uses the vop morph command to morph
> between two EM maps #0 and #1:
> >
> > vop morph #0,1
> >
> > The output map #2 from this command is displayed in a random default
> color that I would like to change. I have tried the following:
> >
> > vop morph #0,1
> > volume #2 color khaki
> >
> > This works, but the very first frame in the movie following the vop
> morph still contains the default color, while the following frames contain
> the set color 'khaki'. This results in a flicker in the movie with the
> wrong color. Any help/suggestions on how to get this set correctly? Let me
> know if there needs clarification - thanks!
> >
> > I am using Chimera Version 1.6 Mac OSX
>



-- 
~~~~~~~~~~~~~~~~~~~~~~
*Steve Reichow
*Email: slreichow at gmail.com
~~~~~~~~~~~~~~~~~~~~~~
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