[Chimera-users] Regarding organic molecule minimization

[Satheesh G]

Dear Sir,

The azo compounds (organic molecule) minimization using Chimera software
giving linear form (R-N=N-R  to R-N=N-R (180 degrees bong angle between
R-N=N instead  R-N=N- 120 degrees). Which is not true. I have used the
gasteiger and  amber ff12sb force field. Please suggest me to solve this
problem.

Thanking you.

Satheesh.



[image: Inline image 1]
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20140927/9d820353/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image.png
Type: image/png
Size: 1816 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20140927/9d820353/attachment.png>