[Chimera-users] Hello I have a question

[Teddy Chen]

Hi my name is Teddy, I used UCSF Chimera for my research, and it is a very
good software! I appreciate you made it.

I have a question about structure comparison, I usually use Matchmaker to
overlap 2 similar protein fragment to compare the difference. I wonder if
the structure is bent or twisted during the matching process, in order to
fit the reference structure more?

For example, the attachment is for demonstration.
There is a protein A, and protein A have a short from that miss some amino
acid (the green part is missed). So the result produced by the Matchmaker
would be A or B?
If the result is A, can I make result B by UCSF Chimera?

Thank you!
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