[Chimera-users] BIOMT symmetry matrices

[David Bhella]

Hi
If you can align your two models using matchmaker, you should be able to save the coordinates of your model (relative to the model with bioMT data). A simple copy and paste of the bioMT matrices in a text editor should then suffice.
Best
D
Sent from my iPhone

> On 18 Apr 2018, at 18:23, Elaine Meng <meng at cgl.ucsf.edu> wrote:
> 
> Hi Joe,
> Besides the “group biomt” option of “sym,” there is also “group #N” where N is the model number of another model.  
> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/sym.html#options>
> 
> However, I believe you would need to match your structure onto model N pretty well before using that.
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.                       
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> 
>> On Apr 18, 2018, at 9:43 AM, Healey, Joe <J.R.J.Healey at warwick.ac.uk> wrote:
>> 
>> Hi Chimera Team,
>> 
>> I'm familiar with the sym command within chimera, specifying particular degrees of rotational symmetry for instance.
>> 
>> As the biological unit feature tends to work quite nicely for this for a number of the proteins that I'm working on, I was wondering if there is a simple way to apply the BIOMT matrix for one protein to another?
>> 
>> The proteins I want to apply them to are homology models of the equivalent proteins, so their biological unit information should be meaningful.
>> 
>> If its possible to do this in chimera that would be great, but if you have any alternative suggestions (perhaps its possible to copy the BIOMT lines from one PDB text file to another?
>> 
>> Joe Healey
>> 
> 
> 
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