[Chimera-users] SASA calculation per residue

[Andrew Macrae]

Thanks, that clears it up

On Fri, Jun 22, 2018 at 1:09 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Andrew,
> Your command attempt mystifies me, but I’ll go on the rest of what you
> said…
>
> Just show a molecular surface (e.g. with command “surface”) and then save
> a file with the list of residue SASA values.  You would save that file
> using the Render by Attribute tool (in menu under Tools… Structure
> Analysis); in that dialog’s menu choose File… Save Attributes.  In the
> attribute-saving dialog you have to specify which attribute you want:
> “areaSAS” of “residues” (there is also the same attribute name for
> individual attoms)
>
> Attribute-saving is described here, in the bottom section of the page:
> <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/render/
> render.html#saving>
>
> There is an option to restrict the save to the current selection, if you
> don’t want the list for all residues.
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Jun 22, 2018, at 12:01 PM, Andrew Macrae <amacrae at ucsc.edu> wrote:
> >
> > Hello Chimera developers,
> >
> > I'm trying to calculate sasa scores for a list of individual residues in
> chimera and cant quite get it. Ive tried commands and the define attribute
> menu. The command ive been using is
> >
> > 0.23:23/areaSAS
> >
> > I've used similar things but I don't know what Im missing. Thanks for
> any help.
> >
> > Cheers,
> > Andrew MacRae
> > UCSC
>
>
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