[Chimera-users] coot/chimera model-map misalignment

[Gabriel Brandt]

Elaine & Tom -

Thanks so much for your help. The vop cover command worked perfectly, which is a bit embarrassing because I know you've posted on that before. 

I thought there was a rotation involved, which I guess reflects rather badly on my ability to compare electron density maps to models. 

I was also thinking that it was a more complicated transformation, because I could see that the Coot map headers include some symmetry operators that were different from the working Phenix maps. (symop=x,y,z versus symop= ). ChimeraX opens the map but returns this error:

Unable to parse symmetry operators of coot-map.ccp4 b'x, y, z

Either way, vop cover solves the problem.

gsb


………………………………...
Gabriel Brandt
Assistant Professor
Department of Chemistry
Franklin & Marshall College
PO Box 3003
Lancaster, PA 17604
ph: 717.358.4846

shipping address:
415 Harrisburg Ave
Lancaster, PA 17603
………………………………...

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