[Chimera-users] How can I export the list of hydrogen bonding and clash/contact?

[Elaine Meng]

Hi Paris,
If you are using the tool dialogs (Tools… Structure Analysis… FIndHBond, Find Clashes/Contacts) they have checkbox options to “Write information to file".  Click the Help button on the dialogs to see their help pages, or view the same information on our web site:

<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbond.html>
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/findclash/findclash.html>

Or, if you are using the commands “findhbond” (or “hbonds”) or “findclash” they each have a “saveFile” option.

<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/hbonds.html>
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/findclash.html>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Nov 14, 2018, at 6:06 PM, Paris Tzou <paristzou at gmail.com> wrote:
> 
> Hi,
>    I have a structure of protein-DNA complex. How can I export the list of hydrogen bonding and clash/contact, please?
> Thanks a lot,
> Paris