[Chimera-users] How to get the best references

[Elaine Meng]

Hi,
Looks like you already have enough references, but you can check in the User’s Guide instead of asking here.

For Chimera, use Chimera menu:  Help… Citation Info.

For the others, it depends which Chimera tools you used.  You can press the “Help” button on each tool and see if there is another reference.

If you mean you wanted other references about docking that are not necessarily related to Chimera, then you should do more searching yourself, like with Pubmed and/or Google.

Elaine
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Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On May 28, 2019, at 7:09 AM, temban billyhp <btemban at yahoo.com> wrote:
> 
> Hi
> I used UCSF chimera for MOLECULAR  DOCKING. Are these citations below enough for me to cite. Could you please help me with more citations. 
> 1.Pettersen, E.F., Goddard, T.D., Huang, C.C., Couch, G.S., Greenblatt, D.M., Meng, E.C., and Ferrin, T.E., UCSF Chimera--a visualization system for exploratory research and analysis, J. Comput. Chem., 2004, vol. 25, p. 1605.
> 2. Maier, J.A., Martinez, C., Kasavajhala, K., Wickstrom, L., Hauser, K.E., and C. Simmerling, ff14SB: Improving the accuracy of protein side chain and backbone parameters from ff99SB, J. Chem. Theory Comput., 2015, vol. 11, p. 3696.
> 3. Shapovalov, M.V. and Dunbrack, R.L., A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions, Structure, 2011, vol. 19, p. 844.
> 4. Trott, O. and Olson, A.J., AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading, Journal of Computational Chemistry, 2010, vol. 31, p. 455.
> 
> Best regards. 
> 
> Sent from Yahoo Mail on Android
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