[Chimera-users] (no subject)

[Omar De Bei]

Dear Susanna,

I recommend you to follow this short tutorial.

http://www.cgl.ucsf.edu/chimera/videodoc/surfaceresidues/index.html

Best,

Omar

Il 9/24/2019 3:24 PM, Susy López ha scritto:
>
> Dear Tom Goddard
>
>
> I would just like to know if there is any command in Chimera, which 
> allows me to identify the atoms that are part of the total solvent 
> accessible surface area (SAS).
>
> I will try to explain my question with an example.
>
> First,
>
> Commands:
>
> open 121p
>
> select :62
>
> show sel
>
> Select>residue>all nonstandard
>
> Actions>Atoms/Bonds>delete
>
> select :62 at OE1
>
> surface sel
>
> image.png
>
>
> As shown in the image, I have identified an atom that forms the 
> surface accessible to the solvent. However, to identify the total 
> atoms of that protein I have to select atom by atom, which implies a 
> lot of time and more if I have several proteins.
>
> So, I would like to know, if it´s possible to obtain a command that 
> allows me to select all the atoms at the same time, specifying the 
> atoms that are part of the total solvent accessible surface area(SAS).
>
> Thank you (:
>
> kind regards,
>
> Susanna
>
>
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