[Chimera-users] Question about selecting residues

[Zhang, Bixia]

Dear Chimera Developers,
I have a question when I use Chimera these days. I was looking for the residues that interact with my ligand. I notice that when I open the pdb, it will show the residues' side chains automatically. I am wondering how you select those residues (by what principle that you decide it is interacting with ligand). And is there a list for the residues? I want to marked out the amino acids on my sequence but it is very hard to count all of them. I hope to get help from you. Thank you very much!
Best,
Bixia

________________________________
From: Zhang, Bixia <bixia.zhang at wsu.edu>
Sent: Friday, September 27, 2019 10:11
To: chimera-users at cgl.ucsf.edu <chimera-users at cgl.ucsf.edu>
Subject: Re: Question about selecting residues

Dear Chimera Developers,
I have a question when I use Chimera these days. I was looking for the residues that interact with my ligand. I notice that when I open the pdb, it will show the residues' side chains automatically. I am wondering how you select those residues (by what principle that you decide it is interacting with ligand). And is there a list for the residues? I want to marked out the amino acids on my sequence but it is very hard to count all of them. I hope to get help from you. Thank you very much!
Best,
Bixia

________________________________
From: Zhang, Bixia
Sent: Friday, September 27, 2019 10:06
To: chimera-users at cgl.ucsf.edu <chimera-users at cgl.ucsf.edu>
Subject: Question about selecting residues

Dear Chimera Developers,
I have a question when I use Chimera these days. I was looking for the residues that interact with my ligand. I notice that when I open the pdb, it will show the residues' side chains automatically. I am wondering how you select those residues (by what principle that you decide it is interacting with ligand). And is there a list for the residues? I want to marked out the amino acids on my sequence but it is very hard to count all of them. I hope to get help from you. Thank you very much!
Best,
Bixia
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