[Chimera-users] 2D diagram and CDK-Depiction.jar

David Ricardo Figueroa Blanco dr.figueroa10 at uniandes.edu.co
Sun Apr 5 19:00:32 PDT 2020


Hi!

I am trying to generate 2d diagrams with Dockview  from autodock vina outputs but I get this problem :

Web Service: cdkdepiction converts either SMILES strings or MOL2 files into 2D structure diagrams in PNG format
Opal service URL: http://webservices.rbvi.ucsf.edu/opal2/services/CDKDepictionService
Opal job URL: http://webservices.rbvi.ucsf.edu/appCDKDepictionService1586137005272-807576004
CDKDepictionService stderr
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Error: Unable to access jarfile /usr/local/cdk/CDK-Depiction.jar
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CDKDepictionService stdout
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[no output]
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Structure diagram generation failed; see Reply Log for more information

Any suggestion or needed program to install?

Thank you !
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