[Chimera-users] axes

Eric Pettersen pett at cgl.ucsf.edu
Mon Jul 13 16:30:52 PDT 2020


Looks good to me.  Glad you got it to work.

--Eric

> On Jul 11, 2020, at 10:01 AM, Hernando J Sosa <hernando.sosa at einsteinmed.org> wrote:
> 
> Thanks Eric, I got it to work now.  To summarize the code to get the axis information from an atom spec string  looks like this. Please let me know if there is a better or simpler way to do it.
> 
> #-----------------------------------
> import StructMeasure
> 
> atomspec = '#0:14-37.A at CA'
> atoms    = chimera.selection.OSLSelection(atomspec).vertices()
> xyzs     = chimera.numpyArrayFromAtoms(atoms)
> myaxis   = StructMeasure.axis(xyzs)
> print myaxis
> #-------------------------------------
> 
> Note that I had to import StructMeasure.
> 
> Best
> 
> H.
> 
> 
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