[Chimera-users] Molecular docking

[Elaine Meng]

Hi Judith,
No idea -- to better ask the question, would have been helpful to attach an image and say what you mean by "analyse." 

If you are finding H-bonds, for example, then the H-bonds might be shown with cyan lines between donors and acceptors, but if you chose to run such an analysis, I don't think the lines would be mysterious.
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbond.html>

Also if you selected something with Ctr-click or any of several other methods, then the selection is outlined in green.
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/selection.html>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On May 24, 2020, at 10:18 AM, Schaf, Judith (2017) <Judith.Schaf.2017 at live.rhul.ac.uk> wrote:
> 
> Hi everybody,
> 
> I have a quick question: when I analyse the results of a molecular docking assay (performed with SwissDock) on Chimera I sometimes see a green line between the protein and the ligand.
> 
> Does someone know what this line represents? 
> 
> 
> 
> Thank you,
> Judith