[Chimera-users] Fwd: question Help
Firat KURT
f.kurt at alparslan.edu.tr
Mon May 16 04:19:56 PDT 2022
*Please do not mind my previous messages. After sending you my email, it
occurred to me that perhaps, my university's IT security system prevents
such submissions. **I tried to bypass the system through my portable wifi
device and using my hotspot feature on my mobile phone*.* Now everything
works fine. I am sorry for this inconvenience. If I knew this earlier, I
would not have sent the previous email. Thank you for your patience and
understanding. *
*I sorry for the inconvenience again. *
*Regards, *
---------- Forwarded message ---------
From: Firat KURT <f.kurt at alparslan.edu.tr>
Date: Mon, May 16, 2022 at 2:01 PM
Subject: question Help
To: <chimera-users at cgl.ucsf.edu>
*Hi, *
*I have several problems regarding running some features of and
registration of chimera. *
*Firstly, I am not able to do registration. It keeps giving the error
message below: *
Error reading 1yti:
Error during PDB fetch: [Errno socket error] [Errno 10054] An existing
connection was forcibly closed by the remote host
Model 0 (AT4G26590_1_ATOPT5.pdb) appears to be a protein without secondary
structure assignments.
Automatically computing assignments using 'ksdssp' and parameter values:
energy cutoff -0.5
minimum helix length 3
minimum strand length 3
Use command 'help ksdssp' for more information.
Traceback from web service request (connection setup):
Traceback (most recent call last):
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 11, in __init__
self._setup(serviceName, opalURL, sessionData)
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 50, in _setup
self.sudsClient = Client(self.serviceURL + "?wsdl", **kw)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\client.py", line
115, in __init__
self.wsdl = reader.open(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
150, in open
d = self.fn(url, self.options)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\wsdl.py", line
136, in __init__
d = reader.open(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
74, in open
d = self.download(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
100, in download
return sax.parse(string=content)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\sax\parser.py",
line 133, in parse
sax.parse(source)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line
111, in parse
xmlreader.IncrementalParser.parse(self, source)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\xmlreader.py", line
123, in parse
self.feed(buffer)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line
224, in feed
self._err_handler.fatalError(exc)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\handler.py", line 38,
in fatalError
raise exception
SAXParseException: <unknown>:76:2: mismatched tag
Typically, if you get a TypeError, it's a problem on the remote server
and it should be fixed shortly. If you get a different error or
get TypeError consistently for more than a day, please report the
problem using the Report a Bug... entry in the Help menu. Please
include the traceback printed above as part of the problem description.
Traceback from Blastp request:
Traceback (most recent call last):
File "C:\Program Files\Chimera 1.16\share\blastpdb\ParserBlastP.py", line
362, in _initBlast
self.opal = OpalService(self.ServiceName)
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 21, in __init__
raise NonChimeraError("Web service appears "
NonChimeraError: Web service appears to be down. See Reply Log for more
details.
Typically, if you get a TypeError, it's a problem on the remote server
and it should be fixed shortly. If you get a different error or
get TypeError consistently for more than a day, please report the
problem using the Report a Bug... entry in the Help menu. Please
include the traceback printed above as part of the problem description.
Blast web service appears to be down. See Reply Log for more details.
Traceback from web service request (connection setup):
Traceback (most recent call last):
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 11, in __init__
self._setup(serviceName, opalURL, sessionData)
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 50, in _setup
self.sudsClient = Client(self.serviceURL + "?wsdl", **kw)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\client.py", line
115, in __init__
self.wsdl = reader.open(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
150, in open
d = self.fn(url, self.options)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\wsdl.py", line
136, in __init__
d = reader.open(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
74, in open
d = self.download(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
100, in download
return sax.parse(string=content)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\sax\parser.py",
line 133, in parse
sax.parse(source)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line
111, in parse
xmlreader.IncrementalParser.parse(self, source)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\xmlreader.py", line
123, in parse
self.feed(buffer)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line
224, in feed
self._err_handler.fatalError(exc)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\handler.py", line 38,
in fatalError
raise exception
SAXParseException: <unknown>:76:2: mismatched tag
Typically, if you get a TypeError, it's a problem on the remote server
and it should be fixed shortly. If you get a different error or
get TypeError consistently for more than a day, please report the
problem using the Report a Bug... entry in the Help menu. Please
include the traceback printed above as part of the problem description.
Traceback from Blastp request:
Traceback (most recent call last):
File "C:\Program Files\Chimera 1.16\share\blastpdb\ParserBlastP.py", line
362, in _initBlast
self.opal = OpalService(self.ServiceName)
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 21, in __init__
raise NonChimeraError("Web service appears "
NonChimeraError: Web service appears to be down. See Reply Log for more
details.
Typically, if you get a TypeError, it's a problem on the remote server
and it should be fixed shortly. If you get a different error or
get TypeError consistently for more than a day, please report the
problem using the Report a Bug... entry in the Help menu. Please
include the traceback printed above as part of the problem description.
Blast web service appears to be down. See Reply Log for more details.
error Exception in Tk callback
Function: <bound method BugReportGUI.Submit of
<BugReport.BugReportGUI.BugReportGUI object at 0x000000001A1CAFD0>> (type:
<type 'instancemethod'>)
Module: <module 'BugReport.BugReportGUI' from 'C:\Program Files\Chimera
1.16\share\BugReport\BugReportGUI.pyc'> (line: 348)
Args: ()
Traceback (innermost last):
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\Pmw\Pmw_1_3_3\lib\PmwBase.py", line 1747, in
__call__
return apply(self.func, args)
File "C:\Program Files\Chimera 1.16\share\BugReport\BugReportGUI.py",
line 426, in Submit
BUG_SELECTOR, fields)
File "C:\Program Files\Chimera 1.16\share\CGLutil\multipart.py", line 33,
in post_multipart_formdata
retcode, retmsg, headers = h.getreply()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1196, in
getreply
response = self._conn.getresponse()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1121, in
getresponse
response.begin()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 438, in
begin
version, status, reason = self._read_status()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 394, in
_read_status
line = self.fp.readline(_MAXLINE + 1)
File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in
readline
data = self._sock.recv(self._rbufsize)
error: [Errno 10054] An existing connection was forcibly closed by the
remote host
error: [Errno 10054] An existing connection was forcibly closed by the
remote host
File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in
readline
data = self._sock.recv(self._rbufsize)
See reply log for Python traceback.
IOError Exception in Tk callback
Function: <function command at 0x00000000151E8898> (type: <type
'function'>)
Module: <module 'chimera.baseDialog' from 'C:\Program Files\Chimera
1.16\share\chimera\baseDialog.pyc'> (line: 447)
Args: ()
Traceback (innermost last):
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\Pmw\Pmw_1_3_3\lib\PmwBase.py", line 1747, in
__call__
return apply(self.func, args)
File "C:\Program Files\Chimera 1.16\share\chimera\baseDialog.py", line
449, in command
getattr(s, buttonFuncName(txt))()
File "C:\Program Files\Chimera 1.16\share\chimera\register.py", line 294,
in Register
file = urllib.urlopen(regURL, params)
File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 89, in
urlopen
return opener.open(url, data)
File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 215, in open
return getattr(self, name)(url, data)
File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 351, in
open_http
errcode, errmsg, headers = h.getreply()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1196, in
getreply
response = self._conn.getresponse()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1121, in
getresponse
response.begin()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 438, in
begin
version, status, reason = self._read_status()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 394, in
_read_status
line = self.fp.readline(_MAXLINE + 1)
File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in
readline
data = self._sock.recv(self._rbufsize)
IOError: [Errno socket error] [Errno 10054] An existing connection was
forcibly closed by the remote host
IOError: [Errno socket error] [Errno 10054] An existing connection was
forcibly closed by the remote host
File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in
readline
data = self._sock.recv(self._rbufsize)
See reply log for Python traceback.
*Secondly, when I try to model a sequence using modeller, I am having error
message in first step. When I select "Tools>sequence>sequence>balst
protein" and paste the sequence of interest to the respective area, I got
the error message below :*
Error reading 1yti:
Error during PDB fetch: [Errno socket error] [Errno 10054] An existing
connection was forcibly closed by the remote host
Model 0 (AT4G26590_1_ATOPT5.pdb) appears to be a protein without secondary
structure assignments.
Automatically computing assignments using 'ksdssp' and parameter values:
energy cutoff -0.5
minimum helix length 3
minimum strand length 3
Use command 'help ksdssp' for more information.
Traceback from web service request (connection setup):
Traceback (most recent call last):
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 11, in __init__
self._setup(serviceName, opalURL, sessionData)
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 50, in _setup
self.sudsClient = Client(self.serviceURL + "?wsdl", **kw)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\client.py", line
115, in __init__
self.wsdl = reader.open(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
150, in open
d = self.fn(url, self.options)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\wsdl.py", line
136, in __init__
d = reader.open(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
74, in open
d = self.download(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
100, in download
return sax.parse(string=content)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\sax\parser.py",
line 133, in parse
sax.parse(source)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line
111, in parse
xmlreader.IncrementalParser.parse(self, source)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\xmlreader.py", line
123, in parse
self.feed(buffer)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line
224, in feed
self._err_handler.fatalError(exc)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\handler.py", line 38,
in fatalError
raise exception
SAXParseException: <unknown>:76:2: mismatched tag
Typically, if you get a TypeError, it's a problem on the remote server
and it should be fixed shortly. If you get a different error or
get TypeError consistently for more than a day, please report the
problem using the Report a Bug... entry in the Help menu. Please
include the traceback printed above as part of the problem description.
Traceback from Blastp request:
Traceback (most recent call last):
File "C:\Program Files\Chimera 1.16\share\blastpdb\ParserBlastP.py", line
362, in _initBlast
self.opal = OpalService(self.ServiceName)
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 21, in __init__
raise NonChimeraError("Web service appears "
NonChimeraError: Web service appears to be down. See Reply Log for more
details.
Typically, if you get a TypeError, it's a problem on the remote server
and it should be fixed shortly. If you get a different error or
get TypeError consistently for more than a day, please report the
problem using the Report a Bug... entry in the Help menu. Please
include the traceback printed above as part of the problem description.
Blast web service appears to be down. See Reply Log for more details.
Traceback from web service request (connection setup):
Traceback (most recent call last):
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 11, in __init__
self._setup(serviceName, opalURL, sessionData)
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 50, in _setup
self.sudsClient = Client(self.serviceURL + "?wsdl", **kw)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\client.py", line
115, in __init__
self.wsdl = reader.open(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
150, in open
d = self.fn(url, self.options)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\wsdl.py", line
136, in __init__
d = reader.open(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
74, in open
d = self.download(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
100, in download
return sax.parse(string=content)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\sax\parser.py",
line 133, in parse
sax.parse(source)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line
111, in parse
xmlreader.IncrementalParser.parse(self, source)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\xmlreader.py", line
123, in parse
self.feed(buffer)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line
224, in feed
self._err_handler.fatalError(exc)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\handler.py", line 38,
in fatalError
raise exception
SAXParseException: <unknown>:76:2: mismatched tag
Typically, if you get a TypeError, it's a problem on the remote server
and it should be fixed shortly. If you get a different error or
get TypeError consistently for more than a day, please report the
problem using the Report a Bug... entry in the Help menu. Please
include the traceback printed above as part of the problem description.
Traceback from Blastp request:
Traceback (most recent call last):
File "C:\Program Files\Chimera 1.16\share\blastpdb\ParserBlastP.py", line
362, in _initBlast
self.opal = OpalService(self.ServiceName)
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 21, in __init__
raise NonChimeraError("Web service appears "
NonChimeraError: Web service appears to be down. See Reply Log for more
details.
Typically, if you get a TypeError, it's a problem on the remote server
and it should be fixed shortly. If you get a different error or
get TypeError consistently for more than a day, please report the
problem using the Report a Bug... entry in the Help menu. Please
include the traceback printed above as part of the problem description.
Blast web service appears to be down. See Reply Log for more details.
error Exception in Tk callback
Function: <bound method BugReportGUI.Submit of
<BugReport.BugReportGUI.BugReportGUI object at 0x000000001A1CAFD0>> (type:
<type 'instancemethod'>)
Module: <module 'BugReport.BugReportGUI' from 'C:\Program Files\Chimera
1.16\share\BugReport\BugReportGUI.pyc'> (line: 348)
Args: ()
Traceback (innermost last):
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\Pmw\Pmw_1_3_3\lib\PmwBase.py", line 1747, in
__call__
return apply(self.func, args)
File "C:\Program Files\Chimera 1.16\share\BugReport\BugReportGUI.py",
line 426, in Submit
BUG_SELECTOR, fields)
File "C:\Program Files\Chimera 1.16\share\CGLutil\multipart.py", line 33,
in post_multipart_formdata
retcode, retmsg, headers = h.getreply()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1196, in
getreply
response = self._conn.getresponse()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1121, in
getresponse
response.begin()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 438, in
begin
version, status, reason = self._read_status()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 394, in
_read_status
line = self.fp.readline(_MAXLINE + 1)
File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in
readline
data = self._sock.recv(self._rbufsize)
error: [Errno 10054] An existing connection was forcibly closed by the
remote host
error: [Errno 10054] An existing connection was forcibly closed by the
remote host
File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in
readline
data = self._sock.recv(self._rbufsize)
See reply log for Python traceback.
IOError Exception in Tk callback
Function: <function command at 0x00000000151E8898> (type: <type
'function'>)
Module: <module 'chimera.baseDialog' from 'C:\Program Files\Chimera
1.16\share\chimera\baseDialog.pyc'> (line: 447)
Args: ()
Traceback (innermost last):
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\Pmw\Pmw_1_3_3\lib\PmwBase.py", line 1747, in
__call__
return apply(self.func, args)
File "C:\Program Files\Chimera 1.16\share\chimera\baseDialog.py", line
449, in command
getattr(s, buttonFuncName(txt))()
File "C:\Program Files\Chimera 1.16\share\chimera\register.py", line 294,
in Register
file = urllib.urlopen(regURL, params)
File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 89, in
urlopen
return opener.open(url, data)
File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 215, in open
return getattr(self, name)(url, data)
File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 351, in
open_http
errcode, errmsg, headers = h.getreply()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1196, in
getreply
response = self._conn.getresponse()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1121, in
getresponse
response.begin()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 438, in
begin
version, status, reason = self._read_status()
File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 394, in
_read_status
line = self.fp.readline(_MAXLINE + 1)
File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in
readline
data = self._sock.recv(self._rbufsize)
IOError: [Errno socket error] [Errno 10054] An existing connection was
forcibly closed by the remote host
IOError: [Errno socket error] [Errno 10054] An existing connection was
forcibly closed by the remote host
File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in
readline
data = self._sock.recv(self._rbufsize)
See reply log for Python traceback.
Traceback from web service request (connection setup):
Traceback (most recent call last):
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 11, in __init__
self._setup(serviceName, opalURL, sessionData)
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 50, in _setup
self.sudsClient = Client(self.serviceURL + "?wsdl", **kw)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\client.py", line
115, in __init__
self.wsdl = reader.open(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
150, in open
d = self.fn(url, self.options)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\wsdl.py", line
136, in __init__
d = reader.open(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
74, in open
d = self.download(url)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line
100, in download
return sax.parse(string=content)
File "C:\Program Files\Chimera
1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\sax\parser.py",
line 133, in parse
sax.parse(source)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line
111, in parse
xmlreader.IncrementalParser.parse(self, source)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\xmlreader.py", line
123, in parse
self.feed(buffer)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line
224, in feed
self._err_handler.fatalError(exc)
File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\handler.py", line 38,
in fatalError
raise exception
SAXParseException: <unknown>:76:2: mismatched tag
Typically, if you get a TypeError, it's a problem on the remote server
and it should be fixed shortly. If you get a different error or
get TypeError consistently for more than a day, please report the
problem using the Report a Bug... entry in the Help menu. Please
include the traceback printed above as part of the problem description.
Traceback from Blastp request:
Traceback (most recent call last):
File "C:\Program Files\Chimera 1.16\share\blastpdb\ParserBlastP.py", line
362, in _initBlast
self.opal = OpalService(self.ServiceName)
File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py",
line 21, in __init__
raise NonChimeraError("Web service appears "
NonChimeraError: Web service appears to be down. See Reply Log for more
details.
Typically, if you get a TypeError, it's a problem on the remote server
and it should be fixed shortly. If you get a different error or
get TypeError consistently for more than a day, please report the
problem using the Report a Bug... entry in the Help menu. Please
include the traceback printed above as part of the problem description.
Blast web service appears to be down. See Reply Log for more details.
*I also attached the image of my input. Would you help me with this please?
How can I fix these problems??*
*My operating system is Windows 10 64X and chimera version is 1.16*
*Regards, *
[image: image.png]
--
İyi çalışmalar dilerim,
Doç. Dr. Fırat Kurt
Bitkisel Üretim ve Teknolojileri Bölümü
Uygulamalı Bilimler Fakültesi
Muş Alparslan Üniversitesi
Muş-Türkiye
Tel :+90 436 249 10 83 Dahili: 2686
Fax :+90 436 231 22 01
----------------------------------------------
Fırat Kurt, Ph. D.
Associate Prof. of Plant Biotechnology
Department of Plant Production and Technologies
Faculty of Applied Sciences
Mus Alparslan University
Mus-Turkey
Phone :+90 436 249 10 83 Ext. :2036
Fax :+90 436 231 22 01
www.alparslan.edu.tr
--
İyi çalışmalar dilerim,
Doç. Dr. Fırat Kurt
Bitkisel Üretim ve Teknolojileri Bölümü
Uygulamalı Bilimler Fakültesi
Muş Alparslan Üniversitesi
Muş-Türkiye
Tel :+90 436 249 10 83 Dahili: 2686
Fax :+90 436 231 22 01
----------------------------------------------
Fırat Kurt, Ph. D.
Associate Prof. of Plant Biotechnology
Department of Plant Production and Technologies
Faculty of Applied Sciences
Mus Alparslan University
Mus-Turkey
Phone :+90 436 249 10 83 Ext. :2036
Fax :+90 436 231 22 01
www.alparslan.edu.tr
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