[Chimera-users] Running the Modify Structure tool using command line in UCSF Chimera

[Prathvi Singh]

Thanks, I'll check it out.

On Thu, Nov 3, 2022 at 10:01 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Prathvi,
> No, there are no commands for the Modify Structure functions in Chimera.
>
> In ChimeraX, we have tried harder to make commands for nearly everything
> you can do in the GUI, so if you use ChimeraX instead, take a look at the
> "build modify" command:
> <https://rbvi.ucsf.edu/chimerax/docs/user/commands/build.html#modify>
>
> See also the ChimeraX "open" command option "forEachFile" to run a
> ChimeraX command file (file.cxc) on each of many input files.
> <https://rbvi.ucsf.edu/chimerax/docs/user/commands/open.html#forEachFile>
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
> > On Nov 3, 2022, at 5:05 AM, Prathvi Singh via Chimera-users <
> chimera-users at cgl.ucsf.edu> wrote:
> >
> > Hi Elaine,
> >
> > Is there a way to run the Modify Structure tool in UCSF Chimera using
> command line? I want to substitute a S-atom with O-atom in more than 100
> structures and doing it for each structure using the GUI looks very time
> consuming. Please help.
> >
> > --
> > Prathvi Singh,
> > Research Fellow,
> > Department of Biological Sciences & Bioengineering,
> > Indian Institute of Technology, Kanpur-208016
>
>

-- 
Prathvi Singh,
Research Fellow,
Department of Biological Sciences & Bioengineering,
Indian Institute of Technology, Kanpur-208016
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