[Chimera-users] Centering icosahedron and capsid in the same place in Chimera

[Noriega, Heather]

Hello,

Ok, that's what I was trying to do yesterday to move the capsid. I will
deactivate and try again. Thank you.

Thank you,

Heather Noriega
PhD-Pharmaceutical Science student
College of Pharmacy
Howard University
heather.noriega at bison.howard.edu
520-203-1883

On Thu, Sep 15, 2022, 12:00 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Heather,
> Maybe your other capsid coordinates just happened to be centered on the
> default location for centering the icosahedron, but this one has offset
> coordinates.  Still you could just move one or the other (capsid or
> icosahedron) so that they are centered in the same place.
>
> In Chimera  (not ChimeraX)  you can deactivate/activate models for motion
> so that only the active ones move with the mouse.  I.e. uncheck the model
> number in the "Active models" list under the command line so that only the
> other one moves with the mouse.  Other ways described here:
> <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/mouse.html#activedef>
>
> I cc'd Chimera-users because the details in this message are about Chimera
> rather than ChimeraX.
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Sep 14, 2022, at 7:06 PM, Noriega, Heather via ChimeraX-users <
> chimerax-users at cgl.ucsf.edu> wrote:
> >
> > Hello,
> >
> > Hi Elaine and Tom. I appreciate your help on the inner volume from
> before both methods with blob and shape, I think I have been able to tailor
> it for my usage. I also have been using the icosahedron surface in Chimera,
> and have not had any issues until this capsid, why is it not forming inside
> the capsid? Did I do something? Thanks in advance.
> >  icos_why.py
> >
> > Thank you,
> >
> > Heather Noriega
> > PhD-Pharmaceutical Science student
> > Howard University
> > heather.noriega at bison.howard.edu
> > 520-203-1883
> > _______________________________________________
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> > ChimeraX-users at cgl.ucsf.edu
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>
>
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