[Chimera-users] Question about anomalous Fourier map

[YOSHIWARA Kentaroh]

Dear Developer,

I want to have a figure of a zinc atom with the anomalous Fourier map, and I generated the pdb and mtz files from Phenix. refine.
Then I converted .mtz into .ccp4 using CCP4i FFT and opened it in UCSF Chimera1.16.
While meshes derived from the .ccp4 file were observed, I was not able to regulate the contoured sigma level.
Actually, I was able to get a figure with a Fourier map using Pymol.
Although the scale of the mesh looks the same between the figures from Chimera and Pymol, the values of the sigma level were completely different. 
Would you suggest to me how to have a figure of a zinc atom with the anomalous Fourier map?

Sincerely,
Yoshiwara, K.

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Kentaro Yoshiwara
Department of Bioscience, Graduate School of Agriculture, Ehime University
3-5-7 Tarumi, Matsuyama, Ehime 790-8566, Japan
Mail：i652020m at mails.cc.ehime-u.ac.jp