[chimerax-users] chimeraX and nice dcv

[Beck, Florian]

Hi,

did anyone use chimerX with nice dcv remote visualisation ?


I tried it and I got the following error:

Could not connect to DCVD
[13619:13619:0403/144451:FATAL:zygote_host_impl_linux.cc(182)] Check failed: ReceiveFixedMessage(fds[0], kZygoteBootMessage, sizeof(kZygoteBootMessage), &boot_pid).
#0 0x2ada6e6ec00e <unknown>
#1 0x2ada6e6ff0ce <unknown>
#2 0x2ada6ec92e33 <unknown>
#3 0x2ada6ec91b2b <unknown>
#4 0x2ada6ec920ce <unknown>
#5 0x2ada6ed09a69 <unknown>
#6 0x2ada6eb13373 <unknown>
#7 0x2ada6d5b1d32 <unknown>
#8 0x2ada6d5b2f45 <unknown>
#9 0x2ada6d555345 QtWebEngineCore::BrowserContextAdapter::BrowserContextAdapter()
#10 0x2ada6cc8b75a QWebEngineProfile::QWebEngineProfile()
#11 0x2ada6ca4cfc9 sipQWebEngineProfile::sipQWebEngineProfile()
#12 0x2ada6ca4d1aa init_type_QWebEngineProfile
#13 0x2ada6be5061b sipSimpleWrapper_init
#14 0x2ada01ad1e83 type_call
#15 0x2ada01a613fb _PyObject_FastCallDict
#16 0x2ada01b51ae8 call_function
#17 0x2ada01b5757a _PyEval_EvalFrameDefault
#18 0x2ada01b5199a _PyEval_EvalCodeWithName
#19 0x2ada01b5a7b8 _PyFunction_FastCallDict
#20 0x2ada01a614fe _PyObject_FastCallDict
#21 0x2ada01a61602 _PyObject_Call_Prepend
#22 0x2ada01a6129a PyObject_Call
#23 0x2ada01b56ffb _PyEval_EvalFrameDefault
#24 0x2ada01b5199a _PyEval_EvalCodeWithName
#25 0x2ada01b51c37 call_function
#26 0x2ada01b570d1 _PyEval_EvalFrameDefault
#27 0x2ada01b5199a _PyEval_EvalCodeWithName
#28 0x2ada01b5a848 _PyFunction_FastCallDict
#29 0x2ada01a614fe _PyObject_FastCallDict
#30 0x2ada01a61602 _PyObject_Call_Prepend
#31 0x2ada01a6129a PyObject_Call
#32 0x2ada01ad96e9 slot_tp_init
#33 0x2ada01ad1e83 type_call
#34 0x2ada01a613fb _PyObject_FastCallDict
#35 0x2ada01b51ae8 call_function
#36 0x2ada01b5757a _PyEval_EvalFrameDefault
#37 0x2ada01b50ff0 _PyFunction_FastCall
#38 0x2ada01b5a9e0 _PyFunction_FastCallDict
#39 0x2ada01a614fe _PyObject_FastCallDict
#40 0x2ada01a61602 _PyObject_Call_Prepend
#41 0x2ada01a6129a PyObject_Call
#42 0x2ada01ad96e9 slot_tp_init
#43 0x2ada01ad1e83 type_call
#44 0x2ada01a6129a PyObject_Call
#45 0x2ada01b56ffb _PyEval_EvalFrameDefault
#46 0x2ada01b5199a _PyEval_EvalCodeWithName
#47 0x2ada01b51c37 call_function
#48 0x2ada01b570d1 _PyEval_EvalFrameDefault
#49 0x2ada01b5199a _PyEval_EvalCodeWithName
#50 0x2ada01b51c37 call_function
#51 0x2ada01b570d1 _PyEval_EvalFrameDefault
#52 0x2ada01b5199a _PyEval_EvalCodeWithName
#53 0x2ada01b51f5f PyEval_EvalCodeEx
#54 0x2ada01a92dae function_call
#55 0x2ada01a6129a PyObject_Call
#56 0x2ada01b56ffb _PyEval_EvalFrameDefault
#57 0x2ada01b5199a _PyEval_EvalCodeWithName
#58 0x2ada01b51c37 call_function
#59 0x2ada01b5757a _PyEval_EvalFrameDefault
#60 0x2ada01b50ff0 _PyFunction_FastCall
#61 0x2ada01b51efd call_function

Fatal Python error: Aborted

Current thread 0x00002ada01821600 (most recent call first):
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/chimerax/core/ui/widgets/htmlview.py", line 70 in __init__
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/chimerax/core/ui/widgets/htmlview.py", line 164 in __init__
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/chimerax/log/tool.py", line 124 in __init__
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/chimerax/log/tool.py", line 172 in __init__
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/chimerax/core/tools.py", line 181 in get_singleton
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/chimerax/log/cmd.py", line 19 in get_singleton
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/chimerax/log/__init__.py", line 30 in start_tool
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/chimerax/core/toolshed/__init__.py", line 2051 in start_tool
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/chimerax/core/tools.py", line 387 in start_tools
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/chimerax/core/tools.py", line 364 in autostart
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/ChimeraX_main.py", line 454 in init
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/site-packages/ChimeraX_main.py", line 643 in <module>
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/runpy.py", line 85 in _run_code
  File "/fs/gpfs03/lv06/pool/pool-bmapps/hpcl5S12/app/install/CHIMERAX/0.1-alpha1/chimerax/lib/python3.6/runpy.py", line 193 in _run_module_as_main
Aborted (core dumped)

best

Florian


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