[chimerax-users] Ignored bad PDB record found

[Maurício Menegatti Rigo]

Hi Elaine,

Thank you for your help. I'll verify my system then.

Sincerely,
Mauricio Menegatti Rigo

Em 25/01/2018 16:20, "Elaine Meng" <meng at cgl.ucsf.edu> escreveu:

> Hi Maurício,
> I don’t have this problem opening your PDB file with ChimeraX 0.5 release
> (Dec 20, 2017) and also the current daily build.  I only get one warning
> message that can be ignored, that it does not like the END on line 2615,
> and the structure looks fine.  I’m testing on Mac.
>
> I’m not sure what’s happening for you.  I guess you could make sure you
> are using a fairly recent version; otherwise, maybe it is something
> specific to your system or platform.
> Elaine
>
> > On Jan 25, 2018, at 10:05 AM, Maurício Menegatti Rigo <
> mauriciomr1985 at gmail.com> wrote:
> >
> > Sure, this is my file.
> >
> >
> > 2018-01-25 16:01 GMT-02:00 Elaine Meng <meng at cgl.ucsf.edu>:
> > Dear Mauricio,
> > It’s hard to tell without having the file, or at least part of it that
> gives these messages.  Could send as attachment to the list, or if private,
> just to me.
> > Best,
> > Elaine
> > -----
> > Elaine C. Meng, Ph.D.
> > UCSF Chimera(X) team
> > Department of Pharmaceutical Chemistry
> > University of California, San Francisco
> >
> > > On Jan 25, 2018, at 8:55 AM, Maurício Menegatti Rigo <
> mauriciomr1985 at gmail.com> wrote:
> > >
> > > I don't understand, my .pdb file seems perfectly fine, but I keep
> getting this error:
> > >
> > > Ignored bad PDB record found on line 1
> > > ATOM 1 N ASN A 1 61.433 13.168 52.787 1.00 69.56 N
> > >
> > > Ignored bad PDB record found on line 2
> > > ATOM 2 CA ASN A 1 62.543 13.695 51.962 1.00 69.56 C
> > >
> > > Ignored bad PDB record found on line 3
> > > ATOM 3 C ASN A 1 61.990 14.337 50.735 1.00 69.56 C
> > >
> > > Ignored bad PDB record found on line 4
> > > ATOM 4 O ASN A 1 60.999 13.878 50.167 1.00 69.56 O
> > >
> > > Ignored bad PDB record found on line 5
> > > ATOM 5 CB ASN A 1 63.479 12.547 51.555 1.00 69.56 C
> > >
> > > 2610 messages similar to the above omitted
> > >
> > > I can open it in Chimera, PyMol, VMD, among others. But in ChimeraX is
> always the same error. I'm working on Linux (Ubuntu 14.04) with ChimeraX
> version 0.5 (2018-01-24).
> > >
> > > Any help?
> > >
> > > Thanks in advance,
> > > Mauricio M Rigo, Ph.D
> >
> > <BEST_SiglecE_murine-BL00230001-chainA.pdb>
>
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