[chimerax-users] Superimposition of Carbohydrate Molecules

[Rajarshi Roy]

Thank you for your quick response.

On Wed, Dec 18, 2019 at 11:57 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Dear Rajarshi Roy,
> The command in ChimeraX to match small molecules is “align” (not “match,”
> which is the same as “matchmaker” and works for biopolymers).
>
> <http://rbvi.ucsf.edu/chimerax/docs/user/commands/align.html>
>
> The error message is wrong!  Sorry about that, we will fix it.  I guess
> the error message was copied from Chimera to ChimeraX without updating the
> wording.
>
> Apologies for the inconvenience.
> Best,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Dec 17, 2019, at 10:28 PM, Rajarshi Roy <phd1701171011 at iiti.ac.in>
> wrote:
> >
> > Dear ChimeraX,
> > I am trying to superimpose multiple carbohydrate chains using chimeraX.
> Using match command, I am unable to do the same.
> > Here is my command:
> > match #2:1-4 to  #1:1-4
> > But I am getting the following error:
> > Reference and/or match model contains no nucleic or amino acid chains.
> > Use the command-line 'match' command to superimpose small
> molecules/ligands.
> >
> > Already I am using match command, still why the same error is showing?
> > Please advise me on how to proceed?
> > Thank you in advance.
> >
> > --
> > with regards
> > Rajarshi Roy
>
>

-- 
*with regards*

*Rajarshi Roy*


*PhD Research Scholar*

*Biosciences and Biomedical Engineering*

*Indian Institute of Technology, Indore*
*India*
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