[chimerax-users] Molecular Dynamics Viewer

[James Starlight]

Dear ChimeraX users!

I would like to make a movie of molecular dynamics trajectory that has
been pre-converted to pdb format (totally 250 frames).

1) Firstly, I have a problem with the recognition of the SS elements
of that ensemble in ChimeraX, where each snapshot looks just like a
mixture of points ( i tried to use dssp but it did not solve the
issue). At the same time the snapshots looks fine in another viewers
including UCSF Chimera (not X)

2) If I have a pdb of the same protein with mapped B-factors and then
I colored it using
color byattribute bfactor palette rainbow range 2,100

2) would it be possible to map the trajectory to that pdb in order to
see the motions (observed in MD) mapped onto the structure that has
been coloured by b-factors?

Thanks for help!