[chimerax-users] Appearance of thick edges

Yazan Abbas yazan.abbas at gmail.com
Thu Jul 11 13:51:03 PDT 2019


Hi Elaine,

The thin silhouettes at the edges in my image are intentional, it is the
thicker silhouettes where the model curves that are bothering me. They seem
to intensify as the clipping changes, or when I rotate the model. In other
figures I am preparing, the silhouettes are even more intense especially in
cartoon helix tube mode and around the the curved parts of the tube (see
image attached). They just appeared at one point in my session and I can't
make them go away. They were definitely not there before even when
silhouettes were turned on.

Yazan



On Wed, Jul 10, 2019 at 8:30 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Yazan,
> Those are “silhouettes” and you can toggle them on and off with the icon
> that looks like a seahorse outline in the Graphics tab of the Toolbar, or
> with the “set” command.
>
> <http://rbvi.ucsf.edu/chimerax/docs/user/tools/graphics.html>
> <http://rbvi.ucsf.edu/chimerax/docs/user/commands/set.html#silhouettes>
>
> The thickness and color of the lines are also adjustable with the “set”
> command.
>
> See also “making images” list of image-related commands:
> <http://rbvi.ucsf.edu/chimerax/docs/user/images.html>
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Jul 10, 2019, at 9:07 AM, Yazan Abbas <yazan.abbas at gmail.com> wrote:
> >
> > Hi all,
> > While playing around with lighting settings, thick black lines appear on
> the edges of my model (picture attached) that do not go away when I reset
> lighting conditions. Is it a "feature" or a bug?
> >
> > I tried playing around with all or most of the lighting options to find
> one that would get rid of them, but that didn't work.
> > Thanks,
> > Yazan
> >
>
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