[chimerax-users] How can I use command crosslinks with bonds?

Jun Ha Song junhasong at berkeley.edu
Sat Mar 2 07:20:58 PST 2019


Dear RBVI,

I want to use few command lines that are exclusively available for
pseudobonds. The problem is that my model is consisted of markers and
links, and there seems like no possible way for me to simply transfer bonds
into pseudobonds.

What commands like *crosslinks histogram *provide seems way to good for it
to be limited for pseudobonds only. Is there a technical reason why such
command is only applicable with pseudobonds? Can commands in
Chimera/ChimeraX that work with pseudobonds easily be adapted to work with
bonds, or is that too much of technical difficulty?

If it is not feasible, is there a way to turn bonds into pseudobonds?

Best,
Junha Song.
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