[chimerax-users] Implement Crosslinks/pseudobond/distances subselections and/or export

[Pascal Albanese]

This is great!
Thanks,

I’ll try tomorrow and give u some feedback.

P

Il giorno mer 6 mar 2019 alle 21:33 Tom Goddard <goddard at sonic.net> ha
scritto:

> Hi Pascal,
>
>   I added the ability to save pseudobond files (.pb suffix) in ChimeraX,
> will be in tonight's builds,
>
> select /A,B min 15 max 24
> save somelinks.pb selectedOnly true
>
> This saves crosslinks between chains A and B with lengths between 15 and
> 24.  The link colors and radii are also saved.
>
> Tom
>
>
> On Mar 6, 2019, at 2:33 AM, Pascal Albanese wrote:
>
> Dear ChimearX Users and developers,
>
> I'm using ChimeraX for visualization and analysis of pseudobonds datasets
> from Crosslinking-MS and i found new features very useful (min max
> selection etc).
> I think it would be useful (but i don't know how much effort will be
> required) to be able to select subsets of distances (e.g. form 15 to 24
> Angstroms, or involving chain A and B) and being able to create and export
> these subsets. for instance i have a Complex of A, B and C and i want to
> select all pseudo-bonds involving A and B and export them as pb file (to be
> able to load them as a separate model lateron). Or to sel min 15 max 24,
> and then export them as pb file (with "save" function).
>
> I think it would be really useful for both crosslinks visualization and
> analysis (i work with datasets of thousands of crosslinks on big complexes
> which make difficult to subselect them, i have to do it with pymol, then
> generate subsets and reformat them as .pb files).
>
> i had a look to previous threads, but i didn't found similar topics. If
> i'm wrong my apologize.
>
> Thank you!
>
> Pascal
>
> --
> Pascal Albanese, PhD
> *Post-doc*, Politecnico di Torino
> Dipartimento DISAT,
>
> BioSolar Lab at Environment Park
>
> Via Livorno 60
> <https://maps.google.com/?q=Via+Livorno+60+10144+Torino&entry=gmail&source=g>
>
> 10144 Torino
> <https://maps.google.com/?q=Via+Livorno+60+10144+Torino&entry=gmail&source=g>
> e-mail: pascal.albanese at polito.it
>
> Phone number: +39 011 2257655 <+39%20011%20225%207655>
>
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> --

Pascal Albanese, PhD

*Post-doc*, Politecnico di Torino

Dipartimento DISAT,

BioSolar Lab at Environment Park

Via Livorno 60

10144 Torino

e-mail: pascal.albanese at polito.it


Phone number: +39 011 2257655 <+39%20011%20225%207655>
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