[chimerax-users] show stands' arrows a little werid

[Elaine Meng]

Oops!  Should be

show #3:lig :<5

(no &)

Sorry about that,
Elaine

> On Oct 14, 2019, at 12:02 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:
> 
> Hi Meinan,
> If you just want to show residues within 5 angstroms of your ligand, you could do it directly with “show” instead of “zone.” For example, if your ligand in #3 has the residue name LIG:
> 
> show #3:lig & :<5
> 
> <http://rbvi.ucsf.edu/chimerax/docs/user/commands/atomspec.html#zones>
> 
> …meaning show any residues within 5A of residue LIG in #3.
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> 
>> On Oct 14, 2019, at 11:06 AM, Tom Goddard <goddard at sonic.net> wrote:
>> 
>> The zone command makes ribbons thinner outside the zone by default and it was not making the arrows smaller.
>> 
>> 	https://www.cgl.ucsf.edu/chimerax/docs/user/commands/zone.html
>> 
>> I have fixed it in tonight's ChimeraX builds.
>> 
>> 	Tom
>> 
>> 
>> 
>>> On Oct 14, 2019, at 9:39 AM, Elaine Meng wrote:
>>> 
>>> Hi Meinan,
>>> It looks like the cartoon style “arrowScale” factor was changed to a large value, maybe by an accidental command?  You could try this command to put it back to the default value:
>>> 
>>> cartoon style arrowScale 2
>>> 
>>> <http://rbvi.ucsf.edu/chimerax/docs/user/commands/cartoon.html#style>
>>> 
>>> I hope this helps,
>>> Elaine
>>> -----
>>> Elaine C. Meng, Ph.D.
>>> UCSF Chimera(X) team
>>> Department of Pharmaceutical Chemistry
>>> University of California, San Francisco
>>> 
>>>> On Oct 12, 2019, at 1:44 PM, Meinan Lyu  wrote:
>>>> 
>>>> Dear Dr.,
>>>> 
>>>> The attached is a picture I saved which the stands' arrows are so wide when using chimeraX to draw some figures, could you please tell me how to make it normal? 
>>>> The problem showed after I put into these two command(not quite sure yet):1. zone #3:Lig residueDistance 5 label false  2. cartoon #3/b suppressBackboneDisplay true.
>>>> Thank you very much！
>>>> 
>>>> Best regards,
>>>> Meinan
>>>> CWRU
>>>> 
>>>> <fig3-aroudresi-ery.tif>
>>> 
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>> 
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