[chimerax-users] Making New Bonds between Protein & Ligand

[Gupta, Arun]

Hi

I followed similar " marker link "  trick proposed by Tom for making new  bonds between a selection of  Serine residue of protein molecule with hydroxy group functionality of ligand molecule typing the below mentioned  command  in ChimeraX command line .

marker link #1:54 at OG #2:PNS at HOP1@SG radius 0.2

However, I am repeatedly getting following error.  " TypeError: Cannot bond atoms in different molecules "

Can you plz suggest the correct command or alternative way for making new bond between Protein & ligand molecules.


Thanks

Arun



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