[chimerax-users] Extract TIFF images from a density map

[Andrea Dallapè]

Hi Tom,

thank you for your prompt and kind reply.
It would be amazing! My idea is to have each plane of the map in a separate
TIFF file (ie 400 plane, 400 images). I didn’t know about the pixel size,
but I will use ImageJ, so it seems to be perfect.
Thank you for your help and efforts.
Have a great day,

Andrea

Il giorno mar 15 dic 2020 alle 18:11 Tom Goddard <goddard at sonic.net> ha
scritto:

> Hi Andrea,
>
>   ChimeraX does not have a command to write map data in TIFF format.  But
> I could add that ability today.  Do you want each  plane of a map written
> to a separate TIFF file, or all planes written to one file, or do you just
> want to show one specific plane and write it out as TIFF?  You know the
> TIFF format doesn't have the pixel size for your map unless it is written
> in using some specific extra info for example using an ImageJ TIFF header
> or OME TIFF header.  What software do you intend to use these TIFF images
> in?
>
>         Tom
>
>
> > On Dec 15, 2020, at 4:19 AM, Andrea Dallapè <andrea.dallape at unitn.it>
> wrote:
> >
> > Hi all,
> >
> > I really hope that you all are healthy and safe.
> > I would like to ask you if there is a method/command script to extract
> TIFF images from a density map. Basically, I used the "plane" option in
> Volume Viewer to see all the planes contained in the map.
> > Now I would like to extract all the planes in TIFF images. Is this
> possible? Could you suggest to me how to deal with it?
> > Thank you for your kind attention.
> > Have a great day,
> >
> > Andrea
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>
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