[chimerax-users] ChimeraX "color by conservation" tutorial

[Elaine Meng]

Hi Fabian,
Oops, I changed the location of the tutorial and forgot to update the open command inside the tutorial.  I just fixed it, so thanks for letting me know!

The command should instead be:

 open https://www.rbvi.ucsf.edu/chimerax/data/conservation-coloring/conservation-coloring.html

(because that's where the tutorial is, <https://www.rbvi.ucsf.edu/chimerax/data/conservation-coloring/conservation-coloring.html>)

In example 1, I used the Consurf sequence alignment to calculate values in ChimeraX (because the Consurf server is one good way to get alignments), but I agree it would also be useful to show the Consurf values directly.  

Thanks,
Elaine


> On Dec 29, 2020, at 1:16 AM, Fabian Glaser <fabian.glaser at gmail.com> wrote:
> 
> Dear Elaine,
> 
> This is gorgeous, thanks a lot! 
> ConSurf grades are easy to use here and easy to present.
> 
> I love chimeraX is really.a big big improvement. 
> 
> The only thing is I tried to open https…. But it does not work for me, I can do the tutorial downloading the file, but not with open http.. command.
> 
> 
> Best,
> 
> Fabian
> 
> Fabian Glaser PhD
> 
> Bioinformatics Knowledge Unit - BKU
> The Lorry I. Lokey Center for Life Sciences and Engineering
> Technion - Israel Institute of Technology, Haifa, Israel
> Web https://lokey.technion.ac.il/bioinformatic-knowledge-unit/
> Tel +972 (0) 4 8293701
> 
>> On 25 Dec 2020, at 0:12, Elaine Meng <meng at cgl.ucsf.edu> wrote:
>> 
>> In case anyone is interested, there's a new tutorial on coloring by sequence conservation using ChimeraX (requires version 1.1 or newer).  It has click-to-execute links if you view it in the ChimeraX built-in browser.
>> 
>> <https://www.rbvi.ucsf.edu/chimerax/data/conservation-coloring/conservation-coloring.html>
>> 
>> Happy holidays!
>> Elaine
>> -----
>> Elaine C. Meng, Ph.D.                       
>> UCSF Chimera(X) team
>> Department of Pharmaceutical Chemistry
>> University of California, San Francisco
>> 
>> 
>> 
>> 
>> 
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