[chimerax-users] ksdssp equivalent in Chimerax

[Elaine Meng]

Hi Jabari,
The command in ChimeraX is “dssp”:

<http://rbvi.ucsf.edu/chimerax/docs/user/commands/dssp.html>

You may already know this, but what is shown initially when you open PDB/mmCIF is usually from the contents of that structure file.  Only if there is no secondary structure information in the file is “dssp” used automatically.

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Jan 6, 2020, at 4:16 PM, Elliott, Jabari <jielliott at wustl.edu> wrote:
> 
> Dear users,
> I was wondering if there was a way to adjust the preset thresholds for betasheet and helix depictions in chimerax. Essentially, I am looking for a “ksdssp” command equivalent.
>  
> -          “Ksdssp –s 2”
>  
> Best, 
> Jabari