[chimerax-users] unsubscribe to ChimeraX-users Digest, Vol 43, Issue 15
Hua tiger
huatiger3 at gmail.com
Tue Jul 14 09:46:29 PDT 2020
On Tue, Jul 14, 2020 at 11:31 AM <chimerax-users-request at cgl.ucsf.edu>
wrote:
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> Today's Topics:
>
> 1. Re: re-assignment of mousemode (Elaine Meng)
> 2. Re: re-assignment of mousemode (piskacek at post.cz)
> 3. Re: re-assignment of mousemode (Elaine Meng)
> 4. Fwd: [Chimera-users] re-assignment of mousemode (Elaine Meng)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 13 Jul 2020 13:45:33 -0700
> From: Elaine Meng <meng at cgl.ucsf.edu>
> To: "<piskacek at post.cz>" <piskacek at post.cz>
> Cc: ChimeraX Users Help <chimerax-users at cgl.ucsf.edu>
> Subject: Re: [chimerax-users] re-assignment of mousemode
> Message-ID: <3BB2DAA6-5B94-4965-B973-F72CFA5E2CFC at cgl.ucsf.edu>
> Content-Type: text/plain; charset=us-ascii
>
> Another way to set pivot (without changing mouse-button functions) is by:
>
> (1) selecting an atom (Ctrl-click on the atom in the graphics window) that
> you want as the center of rotation
> (2) using menu: Actions... Set Pivot
>
> Elaine
>
> > On Jul 13, 2020, at 1:00 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:
> >
> > Hi Martin,
> > It is not clear what you mean by "no response." Do you have a mouse
> with a right button, or can you use trackpad + Alt as the right button? If
> you click any other icons in the Right Mouse tab of the Toolbar, can you
> successfully assign any of those other functions to the right mouse button?
> >
> > Maybe it is a misunderstanding of how the icons work:
> > If it is working correctly, nothing will happen when you click a RIght
> Mouse icon, except that there will be a light green box around that icon.
> Clicking the icon only reassigns the function of the right mouse button,
> but does not perform any action at that time. However, if you reassign to
> pivot by clicking the Right Mouse pivot icon, for example, then later
> clicking with the right mouse button (if you have one) on an atom will make
> that atom the pivot point.
> >
> > <http://rbvi.ucsf.edu/chimerax/docs/user/tools/mousemodes.html>
> >
> > If you do not have a right mouse button, you can use the "mousemode"
> command (instead of icons) to assign the function to a different mouse
> button.
> > <http://rbvi.ucsf.edu/chimerax/docs/user/commands/ui.html#mousemode>
> >
> > I hope this helps,
> > Elaine
> > -----
> > Elaine C. Meng, Ph.D.
> > UCSF Chimera(X) team
> > Department of Pharmaceutical Chemistry
> > University of California, San Francisco
> >
> >> On Jul 13, 2020, at 9:02 AM, <piskacek at post.cz> <piskacek at post.cz>
> wrote:
> >>
> >> Dear Authors of ChimeraX,
> >>
> >> I load and start to use your very useful program ChimeraX on Windows 10
> >> (Alienware 17 x64, I7-4900MQ 2.8GHz, RAM 32GB, GeForce GTX 780M),
> >>
> >> I could do the same and more as in PyMol, but
> >> I have trouble with re-assignment of mousemode in window "Right Mouse"
> >> as result is no response for re-assignment into Pivot or Rotate model
> >>
> >> I tried ChimeraX versions 0,93, 1.0 and 1.1 (daily version) w/o
> improvement
> >>
> >> Please, could you help me
> >> Thank you very much for support
> >>
> >
> >
> > _______________________________________________
> > ChimeraX-users mailing list
> > ChimeraX-users at cgl.ucsf.edu
> > Manage subscription:
> > https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
>
>
>
>
> ------------------------------
>
> Message: 2
> Date: Mon, 13 Jul 2020 23:48:44 +0200 (CEST)
> From: <piskacek at post.cz>
> To: "ChimeraX Users Help" <chimerax-users at cgl.ucsf.edu>
> Subject: Re: [chimerax-users] re-assignment of mousemode
> Message-ID: <KC.3Mchj.NQenTdcZLM.1V3DQy at seznam.cz>
> Content-Type: text/plain; charset="utf-8"
>
> exactly? all as you described all this is not working
>
>
>
> I assigned what my wright? mouse should execute,?
>
> but if I try to apply this function on amino acid from my protein it is
> not
> working
>
>
>
> Should I need to activate my mousemode somehow?
>
> I? suppose, that ChimeraX? is not working properly on windows in my case
> I need some correction of some script to solve some hidden conflict in
> windows
>
> thank you very much for you help
> --
> Martin Piskacek
> Laboratory of Cancer Biology and Genetics?
> www.piskacek.org
> Department of Pathological Physiology
> Faculty of Medicine
> Masaryk University Brno
> Kamenice 5
> 625 00 Brno
> Czech Republic
>
>
> ---------- P?vodn? e-mail ----------
> Od: Elaine Meng <meng at cgl.ucsf.edu>
> Komu: <piskacek at post.cz> <piskacek at post.cz>
> Datum: 13. 7. 2020 22:45:47
> P?edm?t: Re: [chimerax-users] re-assignment of mousemode
> "Another way to set pivot (without changing mouse-button functions) is by:
>
> (1) selecting an atom (Ctrl-click on the atom in the graphics window) that
> you want as the center of rotation
> (2) using menu: Actions... Set Pivot
>
> Elaine
>
> > On Jul 13, 2020, at 1:00 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:
> >
> > Hi Martin,
> > It is not clear what you mean by "no response." Do you have a mouse with
> a
> right button, or can you use trackpad + Alt as the right button? If you
> click any other icons in the Right Mouse tab of the Toolbar, can you
> successfully assign any of those other functions to the right mouse
> button?
> >
> > Maybe it is a misunderstanding of how the icons work:
> > If it is working correctly, nothing will happen when you click a RIght
> Mouse icon, except that there will be a light green box around that icon.
> Clicking the icon only reassigns the function of the right mouse button,
> but
> does not perform any action at that time. However, if you reassign to
> pivot
> by clicking the Right Mouse pivot icon, for example, then later clicking
> with the right mouse button (if you have one) on an atom will make that
> atom
> the pivot point.
> >
> > <http://rbvi.ucsf.edu/chimerax/docs/user/tools/mousemodes.html>
> >
> > If you do not have a right mouse button, you can use the "mousemode"
> command (instead of icons) to assign the function to a different mouse
> button.
> > <http://rbvi.ucsf.edu/chimerax/docs/user/commands/ui.html#mousemode>
> >
> > I hope this helps,
> > Elaine
> > -----
> > Elaine C. Meng, Ph.D.
> > UCSF Chimera(X) team
> > Department of Pharmaceutical Chemistry
> > University of California, San Francisco
> >
> >> On Jul 13, 2020, at 9:02 AM, <piskacek at post.cz> <piskacek at post.cz>
> wrote:
>
> >>
> >> Dear Authors of ChimeraX,
> >>
> >> I load and start to use your very useful program ChimeraX on Windows 10
> >> (Alienware 17 x64, I7-4900MQ 2.8GHz, RAM 32GB, GeForce GTX 780M),
> >>
> >> I could do the same and more as in PyMol, but
> >> I have trouble with re-assignment of mousemode in window "Right Mouse"
> >> as result is no response for re-assignment into Pivot or Rotate model
> >>
> >> I tried ChimeraX versions 0,93, 1.0 and 1.1 (daily version) w/o
> improvement
> >>
> >> Please, could you help me
> >> Thank you very much for support
> >>
> >
> >
> > _______________________________________________
> > ChimeraX-users mailing list
> > ChimeraX-users at cgl.ucsf.edu
> > Manage subscription:
> > https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users
>
> "
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> ------------------------------
>
> Message: 3
> Date: Mon, 13 Jul 2020 15:29:11 -0700
> From: Elaine Meng <meng at cgl.ucsf.edu>
> To: "<piskacek at post.cz>" <piskacek at post.cz>
> Cc: ChimeraX Users Help <chimerax-users at cgl.ucsf.edu>
> Subject: Re: [chimerax-users] re-assignment of mousemode
> Message-ID: <95CBAB29-83B0-4479-BE57-A0636A1D4CAD at cgl.ucsf.edu>
> Content-Type: text/plain; charset=utf-8
>
> You have to display the atoms (e.g. command "show") and click on an atom.
> You said "on amino acid" which makes me think you are clicking on the
> ribbon instead, which is not the same as clicking on an atom and will not
> set the pivot.
>
> If you are displaying atoms and after clicking the Right Mouse "set pivot"
> icon, clicking the atom with the right mouse button doesn't make that atom
> the center of rotation, then you can use menu: Help... Report a Bug to
> submit a bug report that includes more information about your specific type
> of computer.
>
> If you don't want to show atoms, you can select ribbon of the amino acid
> with Ctrl-click (which will draw a green outline for that residue) and then
> use the Actions menu method described in my second message to set the pivot
> to the whole selected residue instead of to a single atom.
>
> Elaine
>
>
> > On Jul 13, 2020, at 2:48 PM, <piskacek at post.cz> <piskacek at post.cz>
> wrote:
> >
> > exactly all as you described all this is not working
> >
> > I assigned what my wright mouse should execute,
> > but if I try to apply this function on amino acid from my protein it is
> not working
> >
> > Should I need to activate my mousemode somehow?
> >
> > I suppose, that ChimeraX is not working properly on windows in my case
> > I need some correction of some script to solve some hidden conflict in
> windows
> >
> > thank you very much for you help
> > --
> > Martin Piskacek
> > Laboratory of Cancer Biology and Genetics?
> > www.piskacek.org
> > Department of Pathological Physiology
> > Faculty of Medicine
> > Masaryk University Brno
> > Kamenice 5
> > 625 00 Brno
> > Czech Republic
> >
> >
> > ---------- P?vodn? e-mail ----------
> > Od: Elaine Meng <meng at cgl.ucsf.edu>
> > Komu: <piskacek at post.cz> <piskacek at post.cz>
> > Datum: 13. 7. 2020 22:45:47
> > P?edm?t: Re: [chimerax-users] re-assignment of mousemode
> >
> > Another way to set pivot (without changing mouse-button functions) is
> by:
> >
> > (1) selecting an atom (Ctrl-click on the atom in the graphics window)
> that you want as the center of rotation
> > (2) using menu: Actions... Set Pivot
> >
> > Elaine
> >
> > > On Jul 13, 2020, at 1:00 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:
> > >
> > > Hi Martin,
> > > It is not clear what you mean by "no response." Do you have a mouse
> with a right button, or can you use trackpad + Alt as the right button? If
> you click any other icons in the Right Mouse tab of the Toolbar, can you
> successfully assign any of those other functions to the right mouse button?
> > >
> > > Maybe it is a misunderstanding of how the icons work:
> > > If it is working correctly, nothing will happen when you click a RIght
> Mouse icon, except that there will be a light green box around that icon.
> Clicking the icon only reassigns the function of the right mouse button,
> but does not perform any action at that time. However, if you reassign to
> pivot by clicking the Right Mouse pivot icon, for example, then later
> clicking with the right mouse button (if you have one) on an atom will make
> that atom the pivot point.
> > >
> > > <http://rbvi.ucsf.edu/chimerax/docs/user/tools/mousemodes.html>
> > >
> > > If you do not have a right mouse button, you can use the "mousemode"
> command (instead of icons) to assign the function to a different mouse
> button.
> > > <http://rbvi.ucsf.edu/chimerax/docs/user/commands/ui.html#mousemode>
> > >
> > > I hope this helps,
> > > Elaine
> > > -----
> > > Elaine C. Meng, Ph.D.
> > > UCSF Chimera(X) team
> > > Department of Pharmaceutical Chemistry
> > > University of California, San Francisco
> > >
> > >> On Jul 13, 2020, at 9:02 AM, <piskacek at post.cz> <piskacek at post.cz>
> wrote:
> > >>
> > >> Dear Authors of ChimeraX,
> > >>
> > >> I load and start to use your very useful program ChimeraX on Windows
> 10
> > >> (Alienware 17 x64, I7-4900MQ 2.8GHz, RAM 32GB, GeForce GTX 780M),
> > >>
> > >> I could do the same and more as in PyMol, but
> > >> I have trouble with re-assignment of mousemode in window "Right
> Mouse"
> > >> as result is no response for re-assignment into Pivot or Rotate model
> > >>
> > >> I tried ChimeraX versions 0,93, 1.0 and 1.1 (daily version) w/o
> improvement
> > >>
> > >> Please, could you help me
> > >> Thank you very much for support
> > >>
>
>
>
>
> ------------------------------
>
> Message: 4
> Date: Tue, 14 Jul 2020 08:30:00 -0700
> From: Elaine Meng <meng at cgl.ucsf.edu>
> To: ChimeraX Users Help <chimerax-users at cgl.ucsf.edu>
> Cc: "<piskacek at post.cz>" <piskacek at post.cz>
> Subject: [chimerax-users] Fwd: [Chimera-users] re-assignment of
> mousemode
> Message-ID: <774953A9-2144-4D0C-8FC0-4643233C0934 at cgl.ucsf.edu>
> Content-Type: text/plain; charset="us-ascii"
>
> sending to chimerax-users instead of chimera-users
>
> (I'd accidentally set the "reply-to" to the wrong list, sorry -- Elaine )
>
> > Begin forwarded message:
> >
> > From: Elaine Meng <meng at cgl.ucsf.edu>
> > Subject: Re: [Chimera-users] [chimerax-users] re-assignment of mousemode
> > Date: July 14, 2020 at 8:25:20 AM PDT
> > To: "<piskacek at post.cz>" <piskacek at post.cz>
> > Cc: "chimera-users at cgl.ucsf.edu BB" <chimera-users at cgl.ucsf.edu>
> > Reply-To: "chimera-users at cgl.ucsf.edu BB" <chimera-users at cgl.ucsf.edu>
> >
> > Hi Martin,
> > The "Pivot" function sets the center of rotation for the whole view, for
> when you rotate everything with the mouse. It does not rotate the bond.
> If you want to rotate the bond, instead use the "Bond rotation" mouse mode,
> the icon much further right on the same toolbar as shown in your image.
> >
> > The Right Mouse icons and what they mean are listed here:
> > <http://rbvi.ucsf.edu/chimerax/docs/user/tools/mousemodes.html>
> >
> > Best,
> > Elaine
> > -----
> > Elaine C. Meng, Ph.D.
> > UCSF Chimera(X) team
> > Department of Pharmaceutical Chemistry
> > University of California, San Francisco
> >
> >
> >> On Jul 14, 2020, at 5:16 AM, <piskacek at post.cz> <piskacek at post.cz>
> wrote:
> >>
> >> Dear Elaine,
> >> thank you very much for your assistance, but
> >> I do everything correctly, but it just did not work = see figure
> >> I would like to rotate tryptofan in my figure, so as first I need to
> set pivot on the C-atom (designated here as CB) and than rotate with right
> mouse the tryptofan
> >>
> >> <Mail Attachment.png>
> >
> >
> > _______________________________________________
> > Chimera-users mailing list: Chimera-users at cgl.ucsf.edu
> > Manage subscription:
> https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users
>
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