[chimerax-users] addAtom

[Aritz Roa Eguiara]

Yes! Thank you very much.

All the best,

Aritz



> On 26 Mar 2020, at 21:22, Elaine Meng <meng at cgl.ucsf.edu> wrote:
> 
> Hi Aritz,
> For adding hydrogens:  
> see command "addh"
> <https://eur02.safelinks.protection.outlook.com/?url=http%3A%2F%2Frbvi.ucsf.edu%2Fchimerax%2Fdocs%2Fuser%2Fcommands%2Faddh.html&data=02%7C01%7Caritz.eguiara%40cpr.ku.dk%7C196403770043476e073308d7d1c3676b%7Ca3927f91cda14696af898c9f1ceffa91%7C0%7C0%7C637208509507969785&sdata=4vnOlAJ9ISQLdhi9%2F6k1EGagZGqhDhKjFLTriEOHZ94%3D&reserved=0>
> 
> For adding an individual atom (start structure) or adding/changing atoms connected to an existing molecule (modify structure):
> Build Structure tool (in menu under Tools... Structure Editing)
> <https://eur02.safelinks.protection.outlook.com/?url=http%3A%2F%2Frbvi.ucsf.edu%2Fchimerax%2Fdocs%2Fuser%2Ftools%2Fbuildstructure.html&data=02%7C01%7Caritz.eguiara%40cpr.ku.dk%7C196403770043476e073308d7d1c3676b%7Ca3927f91cda14696af898c9f1ceffa91%7C0%7C0%7C637208509507969785&sdata=roJBMy37qKY%2F25IE5Y3M7CGRcePsO%2FXt7m27K2EFjlA%3D&reserved=0>
> 
> For adding "markers" (balls or spheres, but implemented as atoms):
> Marker Placement tool (in menu under Tools... Volume Data):
> <https://eur02.safelinks.protection.outlook.com/?url=http%3A%2F%2Frbvi.ucsf.edu%2Fchimerax%2Fdocs%2Fuser%2Ftools%2Fmarkerplacement.html&data=02%7C01%7Caritz.eguiara%40cpr.ku.dk%7C196403770043476e073308d7d1c3676b%7Ca3927f91cda14696af898c9f1ceffa91%7C0%7C0%7C637208509507969785&sdata=SoTFjTfj6v755WT7rTQa%2B86EAN7VgYQ3wEg5zRyJ58Y%3D&reserved=0>
> 
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.                       
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> 
>> On Mar 26, 2020, at 8:53 AM, Aritz Roa Eguiara <aritz.eguiara at cpr.ku.dk> wrote:
>> 
>> Dear ChimeraX team,
>> Maybe it is a silly question but I have been trying to add atoms on ChimeraX but I have not found the way, is there any possibility? I need to plot a channel on my protein but I do not manage to do it without that.
>> Thank you in advance.
>> Best wishes,
>> Aritz
>