[chimerax-users] Errors hold when Plugin a bundle into ChimeraX toolshed

[Yongcheng MU]

Hello,

Hope this email finds you well.

I'm trying to Plugin a bundle into ChimeraX. I have successfully installed
a bundle on macOS, now I'm trying to install the bundle on a Window
Desktop. It holds some errors, I searched a lot and I failed to fix
this issue. I wonder if you have any suggestions?

Best regards,
Yongcheng



[toolshed install Z:/Plugin_dl\dist\ChimeraX_DLStruct-0.1-py3-none-
any.whl](cxcmd:toolshed install
Z:/Plugin_dl\\dist\\ChimeraX_DLStruct-0.1-py3-none-any.whl)

Traceback (most recent call last):
File "C:\Program Files\ChimeraX
1.1\bin\lib\site-packages\chimerax\toolshed_utils\__init__.py", line 489,
in _pip_install
results = _run_pip(command, logger)
File "C:\Program Files\ChimeraX
1.1\bin\lib\site-packages\chimerax\toolshed_utils\__init__.py", line 540,
in _run_pip

*raise RuntimeError(s)RuntimeError: Looking in indexes:
https://pypi.org/simple <https://pypi.org/simple>,
https://cxtoolshed.rbvi.ucsf.edu/pypi/
<https://cxtoolshed.rbvi.ucsf.edu/pypi/> *
Processing z:\plugin_dl\dist\chimerax_dlstruct-0.1-py3-none-any.whl
Requirement already satisfied: ChimeraX-Core~=1.0 in c:\program
files\chimerax 1.1\bin\lib\site-packages (from ChimeraX-DLStruct==0.1)
(1.1)
Requirement already satisfied: numpy~=1.16.4 in
c:\users\ymu\appdata\local\ucsf\chimerax\1.1\site-packages (from
ChimeraX-DLStruct==0.1) (1.16.6)
Requirement already satisfied: torch~=1.7.1 in
c:\users\ymu\appdata\local\ucsf\chimerax\1.1\site-packages (from
ChimeraX-DLStruct==0.1) (1.7.1)
Requirement already satisfied: numpy~=1.16.4 in
c:\users\ymu\appdata\local\ucsf\chimerax\1.1\site-packages (from
ChimeraX-DLStruct==0.1) (1.16.6)
Requirement already satisfied: typing-extensions in
c:\users\ymu\appdata\local\ucsf\chimerax\1.1\site-packages (from
torch~=1.7.1->ChimeraX-DLStruct==0.1) (3.7.4.3)
Collecting quadprog~=0.1.7
Using cached quadprog-0.1.8.tar.gz (269 kB)
Requirement already satisfied: Cython in c:\program files\chimerax
1.1\bin\lib\site-packages (from quadprog~=0.1.7->ChimeraX-DLStruct==0.1)
(0.29.20)
Collecting importlib-metadata~=0.17
Using cached importlib_metadata-0.23-py2.py3-none-any.whl (28 kB)
Requirement already satisfied: zipp>=0.5 in
c:\users\ymu\appdata\local\ucsf\chimerax\1.1\site-packages (from
importlib-metadata~=0.17->ChimeraX-DLStruct==0.1) (3.4.1)




*Building wheels for collected packages: quadprog Building wheel for
quadprog (setup.py): started Building wheel for quadprog (setup.py):
finished with status 'error' Running setup.py clean for quadprog Failed to
build quadprog *
Installing collected packages: quadprog, importlib-metadata,
ChimeraX-DLStruct
Running setup.py install for quadprog: started
Running setup.py install for quadprog: finished with status 'error'
*ERROR: Command errored out with exit status 1: *
command: 'C:\Program Files\ChimeraX 1.1\bin\ChimeraX.exe' -u -c 'import
sys, setuptools, tokenize; sys.argv[0] =
'"'"'C:\\Users\\ymu\\AppData\\Local\\Temp\\pip-install-xakoctiw\\quadprog_7cb25d8bb3904ea3b64643e58389ec80\\setup.py'"'"';
__file__='"'"'C:\\Users\\ymu\\AppData\\Local\\Temp\\pip-install-xakoctiw\\quadprog_7cb25d8bb3904ea3b64643e58389ec80\\setup.py'"'"';f=getattr(tokenize,
'"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"',
'"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))'
bdist_wheel -d 'C:\Users\ymu\AppData\Local\Temp\pip-wheel-gloxcthl'
cwd:
C:\Users\ymu\AppData\Local\Temp\pip-install-xakoctiw\quadprog_7cb25d8bb3904ea3b64643e58389ec80\

Complete output (6 lines):
running bdist_wheel
running build
running build_ext


*skipping 'quadprog\quadprog.cpp' Cython extension (up-to-date) building
'quadprog' extension error: Microsoft Visual C++ 14.0 is required. Get it
with "Build Tools for Visual Studio":
https://visualstudio.microsoft.com/downloads/
<https://visualstudio.microsoft.com/downloads/> *
----------------------------------------


*ERROR: Failed building wheel for quadprog DEPRECATION: Could not build
wheels for quadprog which do not use PEP 517. pip will fall back to legacy
'setup.py install' for these. pip 21.0 will remove support for this
functionality. A possible replacement is to fix the wheel build issue
reported above. You can find discussion regarding this at
https://github.com/pypa/pip/issues/8368
<https://github.com/pypa/pip/issues/8368>. ERROR: Command errored out with
exit status 1: *
command: 'C:\Program Files\ChimeraX 1.1\bin\ChimeraX.exe' -u -c 'import
sys, setuptools, tokenize; sys.argv[0] =
'"'"'C:\\Users\\ymu\\AppData\\Local\\Temp\\pip-install-xakoctiw\\quadprog_7cb25d8bb3904ea3b64643e58389ec80\\setup.py'"'"';
__file__='"'"'C:\\Users\\ymu\\AppData\\Local\\Temp\\pip-install-xakoctiw\\quadprog_7cb25d8bb3904ea3b64643e58389ec80\\setup.py'"'"';f=getattr(tokenize,
'"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"',
'"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))'
install --record
'C:\Users\ymu\AppData\Local\Temp\pip-record-gcrsp7lk\install-record.txt'
--single-version-externally-managed --user --prefix= --compile
--install-headers
'C:\Users\ymu\AppData\Local\UCSF\ChimeraX\Python37\Include\quadprog'
cwd:
C:\Users\ymu\AppData\Local\Temp\pip-install-xakoctiw\quadprog_7cb25d8bb3904ea3b64643e58389ec80\

Complete output (6 lines):
running install
running build
running build_ext
skipping 'quadprog\quadprog.cpp' Cython extension (up-to-date)
building 'quadprog' extension
error: Microsoft Visual C++ 14.0 is required. Get it with "Build Tools for
Visual Studio": https://visualstudio.microsoft.com/downloads/
----------------------------------------
ERROR: Command errored out with exit status 1: 'C:\Program Files\ChimeraX
1.1\bin\ChimeraX.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0]
=
'"'"'C:\\Users\\ymu\\AppData\\Local\\Temp\\pip-install-xakoctiw\\quadprog_7cb25d8bb3904ea3b64643e58389ec80\\setup.py'"'"';
__file__='"'"'C:\\Users\\ymu\\AppData\\Local\\Temp\\pip-install-xakoctiw\\quadprog_7cb25d8bb3904ea3b64643e58389ec80\\setup.py'"'"';f=getattr(tokenize,
'"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"',
'"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))'
install --record
'C:\Users\ymu\AppData\Local\Temp\pip-record-gcrsp7lk\install-record.txt'
--single-version-externally-managed --user --prefix= --compile
--install-headers
'C:\Users\ymu\AppData\Local\UCSF\ChimeraX\Python37\Include\quadprog' Check
the logs for full command output.
WARNING: You are using pip version 20.2.2; however, version 21.0.1 is
available.
You should consider upgrading via the 'C:\Program Files\ChimeraX
1.1\bin\ChimeraX.exe -m pip install --upgrade pip' command.
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