[chimerax-users] C-alphas rendered as dots

Pranav Shah p.shah.lab at gmail.com
Mon Aug 2 07:15:58 PDT 2021


Hi Team,

I am working with a huge model (and a correspondingly huge map), which
makes the handling on my GPU accelerated desktop an agonisingly
frustrating experience. In order to speed up simple (rigid-body)
fitting of the map and model, I decided to use the -C-alpha trace of
the pdb. However, the pdb gets rendered as a bunch of disconnected
dots whereas the same pdb in Chimera is rendered correctly with all
things. Is this a normal behaviour for ChimeraX? I could use Chimera,
but I prefer the way ChiemraX handles large maps as compared to
Chimera. In the absence of a quick fix, would there be a way to
increase the size of the atoms?

Best,
Pranav
--
Pranav Shah
Postdoctoral Research Fellow.

Division of Structural Biology,
Wellcome Trust Centre for Human Genetics,
University of Oxford,
Roosevelt Drive, Oxford OX3 7BN,
UK


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