[chimerax-users] ChimeraX tool installationg

Yongcheng MU ymu004 at odu.edu
Thu Feb 4 10:45:42 PST 2021


Hello,

Hope you are doing well. This is Yongcheng. I am writing this email because
I am trying to install a Deep learning tool in ChimeraX, but I have some
issues about it.

I built and installed my code following the steps on the Chimera Guide
website. I installed my code successfully, but when I run using command
that I created, it hold some errors:

*"RuntimeError: delayed command registration for 'CL_Tensorflow' failed
(register_command() failed for command CL_Tensorflow in bundle
ChimeraX-CL-Tensorflow:*




*cannot import name 'cmd' from 'chimerax.CL_Tensorflow'
(/Users/jackmu/Library/Application
Support/ChimeraX/1.1/site-packages/chimerax/CL_Tensorflow/__init__.py))File
"/Users/jackmu/Desktop/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/commands/cli.py",
line 2142, in lazy_register*
*raise RuntimeError("delayed command registration for %r failed (%s)" %
(cmd_name, e))"*

*"During handling of the above exception, another exception occurred:*

















*Traceback (most recent call last):  File
"/Users/jackmu/Desktop/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/cmd_line/tool.py",
line 275, in execute    cmd.run(cmd_text)  File
"/Users/jackmu/Desktop/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/commands/cli.py",
line 2746, in run    self._find_command_name(final,
used_aliases=_used_aliases)  File
"/Users/jackmu/Desktop/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/commands/cli.py",
line 2489, in _find_command_name    what.lazy_register(cmd_name)  File
"/Users/jackmu/Desktop/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/commands/cli.py",
line 2142, in lazy_register    raise RuntimeError("delayed command
registration for %r failed (%s)" % (cmd_name, e))RuntimeError: delayed
command registration for 'CL_Tensorflow' failed (register_command() failed
for command CL_Tensorflow in bundle ChimeraX-CL-Tensorflow:cannot import
name 'cmd' from 'chimerax.CL_Tensorflow' (/Users/jackmu/Library/Application
Support/ChimeraX/1.1/site-packages/chimerax/CL_Tensorflow/__init__.py))RuntimeError:
delayed command registration for 'CL_Tensorflow' failed (register_command()
failed for command CL_Tensorflow in bundle ChimeraX-CL-Tensorflow:cannot
import name 'cmd' from 'chimerax.CL_Tensorflow'
(/Users/jackmu/Library/Application
Support/ChimeraX/1.1/site-packages/chimerax/CL_Tensorflow/__init__.py))File
"/Users/jackmu/Desktop/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/commands/cli.py",
line 2142, in lazy_register*
*raise RuntimeError("delayed command registration for %r failed (%s)" %
(cmd_name, e))"*

I wonder if you know what's going on here, and how to fix it. Thank you so
much for your time.

Best regards,
Yongcheng
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