[chimerax-users] error when using Blast Protein

Eric Pettersen pett at cgl.ucsf.edu
Fri Feb 5 14:33:00 PST 2021


You're welcome!  Happy I could help.

--Eric

> On Feb 5, 2021, at 2:08 PM, Elghobashi-Meinhardt, Nadia <n.elghobashi-meinhardt at campus.tu-berlin.de> wrote:
> 
> Thank you very much! Working fine now.
> You guys are awesome!!!
> Thank you for the great software.
> 
> -----------------------------------------------
> Dr. Nadia Elghobashi-Meinhardt
> 
> Biomolecular Modeling
> Institute of Chemistry
> Technical University Berlin
> Straße 17. Juni 135
> 10623 Berlin
> From: Eric Pettersen <pett at cgl.ucsf.edu>
> Sent: Friday, February 5, 2021 5:11:46 PM
> To: Elghobashi-Meinhardt, Nadia
> Cc: chimerax-users at cgl.ucsf.edu
> Subject: Re: [chimerax-users] error when using Blast Protein
>  
> Hi Nadia,
> This problem has been fixed in the daily build for a week or two.  Please use that.  Sorry for the inconvenience.
> 
> --Eric
> 
> Eric Pettersen
> UCSF Computer Graphics Lab
> 
> 
>> On Feb 5, 2021, at 5:22 AM, Elghobashi-Meinhardt, Nadia <n.elghobashi-meinhardt at campus.tu-berlin.de <mailto:n.elghobashi-meinhardt at campus.tu-berlin.de>> wrote:
>> 
>> Dear ChimeraX forum,
>> 
>> I am trying to do a sequence search with the Blast Protein tool (MacOS).
>> I have tried using various pdb structures/chains but am repeatedly getting the following
>> error:
>> 
>> "ValueError: not enough values to unpack (expected 2, got 1)"
>> from
>> ".../blastprotein/pdbinfo.py", line 206, in fetch_info
>> entry, auth_cid = pcid.split('_')
>> 
>> What is the correct usage of Blast Protein?
>> Thank you!
>> Nadia
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