[chimerax-users] Having multiple marker files

[SHIQING LIAO]

Hi Tom,

Thank you so much! Really appreciate it!

Best,
Shiqing

On Wed, Jun 30, 2021 at 2:31 PM Tom Goddard <goddard at sonic.net> wrote:

> Hi Shiqing,
>
>   I improved the "color zone" command so you can use the option "farColor
> keep" and do successive color zone colorings while keeping the older
> colorings that are outside the distance range.  For example,
>
>         color zone #1 near #2 distance 50
>         color zone #1 near #3 distance 100 farColor keep
>
> One limitation is that if you then change the surface shape, for example
> change the volume threshold  on a contour surface, then it only preserves
> the most recent color zone command coloring.  Another limitation is that if
> you use the "sharpEdges true" option then the old coloring is lost.
>
>         Tom
>
>
> > On Jun 30, 2021, at 12:49 PM, Elaine Meng via ChimeraX-users <
> chimerax-users at cgl.ucsf.edu> wrote:
> >
> > No, sorry.  Maybe it would be possible by writing python, but I wouldn't
> know how to do it.
> > Elaine
> >
> >> On Jun 30, 2021, at 12:47 PM, SHIQING LIAO <shiqing03 at g.ucla.edu>
> wrote:
> >>
> >> Hi Elaine,
> >>
> >> Thank you! For this situation, however, if I do it in one command, I am
> not able to set different distance for each marker file. Is there a way of
> doing that?
> >>
> >> Best,
> >> Shiqing
> >>
> >> On Wed, Jun 30, 2021 at 12:45 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:
> >> Hi Shiqing,
> >> You would need to do it in one command, e.g.
> >>
> >> color zone #2 near #4,5
> >>
> >> <https://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#zone>
> >>
> >> I hope this helps,
> >> Elaine
> >>
> >>> On Jun 30, 2021, at 12:09 PM, SHIQING LIAO via ChimeraX-users <
> chimerax-users at cgl.ucsf.edu> wrote:
> >>>
> >>> Hi Elaine and Tom,
> >>>
> >>> I actually have a related question on marker files.  I tried to color
> my density by “color zone #2 near #4 distance 70”, for example. However, it
> seems that I can only have one marker file colored (they are mutually
> exclusive). For example, if I want to color area around another model by
> “color zone #2 near #5”, the coloring done by the previous command near #4
> will disappear.
> >>>
> >>> Best,
> >>> Shiqing
> >>>
> >>
> >
> >
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>
>
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