[chimerax-users] Generating map from structure

[Eric Pettersen]

> Begin forwarded message:
> 
> From: "Azad, Roksana" <razad at gc.cuny.edu>
> Subject: Re: [ChimeraX] #4622: save dialog: 'SaveModelOptionWidget' object has no attribute '_name'
> Date: May 11, 2021 at 9:00:00 AM PDT
> To: "ChimeraX-bugs at cgl.ucsf.edu" <ChimeraX-bugs at cgl.ucsf.edu>
> 
> Dear Eric,
> Thank you so much for your reply.
> 
> I have a model of my protein in pdb format, which I am trying to save as .mrc or any sort of volume file on chimera. However, since its a model and do not have any coordinate in the file like xtal or NMR structure, it won’t save it as .mrc or volume file and was giving me the error.
> 
> I want to create a volume file from the model to load on cryoSPARC or relion and create 2D projections to help me pick better 2D classes from my raw data. Do you think there is an option to do something like this on chimera? 
> 
> Thank you again for your time and help in advance – very much appreciated.
> 
> Sincerely,
> Roksana
> 
>> On May 11, 2021, at 11:50 AM, ChimeraX <ChimeraX-bugs-admin at cgl.ucsf.edu> wrote:
>> 
>> #4622: save dialog: 'SaveModelOptionWidget' object has no attribute '_name'
>> -----------------------------------+----------------------------
>>         Reporter:  razad@…       |      Owner:  Eric Pettersen
>>             Type:  defect        |     Status:  closed
>>         Priority:  normal        |  Milestone:
>>        Component:  Input/Output  |    Version:
>>       Resolution:  duplicate     |   Keywords:
>>       Blocked By:                |   Blocking:
>> Notify when closed:                |   Platform:  all
>>          Project:  ChimeraX      |
>> -----------------------------------+----------------------------
>> Changes (by Eric Pettersen):
>> 
>> * status:  accepted => closed
>> * resolution:   => duplicate
>> 
>> 
>> Comment:
>> 
>> Hi Roksana,
>>        Thanks for reporting this problem.  ChimeraX was trying to tell
>> you that you hadn't selected anything to save in the save dialog, but
>> there was an error in the code that generates that message, which is what
>> you saw.  So the error is easy to avoid.  Nonetheless, if you want to
>> always avoid it in the future you could use the current daily build or the
>> 1.2.2 release candidate, both of which have this problem fixed.
>> 
>> --Eric
>> 
>>        Eric Pettersen
>>        UCSF Computer Graphics Lab
>> 
>> --
>> Ticket URL: <https://urldefense.proofpoint.com/v2/url?u=https-3A__plato.cgl.ucsf.edu_trac_ChimeraX_ticket_4622-23comment-3A2&d=DwIGaQ&c=8v77JlHZOYsReeOxyYXDU39VUUzHxyfBUh7fw_ZfBDA&r=4fgdOL7OXxMXFPlc49cdsOT7iuQE5SvhH0LAQDXOb9M&m=y_xtWiBNbqGARKDH4uBLKucBd6REvyw7KcDUGzqsKA0&s=qqaHcE-lt6B4apj9TOlnOZdZKmc14Raau_XpxxhbLOI&e= >
>> ChimeraX <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.rbvi.ucsf.edu_chimerax_&d=DwIGaQ&c=8v77JlHZOYsReeOxyYXDU39VUUzHxyfBUh7fw_ZfBDA&r=4fgdOL7OXxMXFPlc49cdsOT7iuQE5SvhH0LAQDXOb9M&m=y_xtWiBNbqGARKDH4uBLKucBd6REvyw7KcDUGzqsKA0&s=O-F24WKHVhMqXZ-fqXvYUlE7-lgAiyyXNN5PYGWXuCM&e= >
>> ChimeraX Issue Tracker
> 
> 

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