[chimerax-users] Proxy setting with user authentication

Tue May 18 17:12:54 PDT 2021

Dear Eric,

Thank you for your help, though putting “username:password at host” in the “Host” fields didn’t work.

Instead, I successfully installed the plugins (ISOLDE and its prerequisite Clipper) as below.
- ChimeraX 1.2rc (1.2.4, May 14 version) was installed to CentOS7 using the provided rpm.
- wheel files for the plugins (ISOLDE and its prerequisite Clipper) were downloaded from the ChimeraX Toolshed site.
- pip install the plugins with the command below, executed as root (no need to set proxy at this time).
/opt/UCSF/ChimeraX/bin/python3.8 -m pip install \
ChimeraX_ISOLDE-1.2.0-cp38-cp38-manylinux_2_17_x86_64.whl \
ChimeraX_Clipper-0.16.0-cp38-cp38-manylinux_2_17_x86_64.whl

By the way, can you provide an install package for RH7/8 which can be installed to a directory on NFS?
Since we have Unlimited User ChimeraX license, I’d like to install/update the package once for all our PCs.

Takaaki

-----
Dr. Takaaki Fukami (mailto:fukamitka at chugai-pharm.co.jp)
Protein Science Dept. (Protein Science 2 Gr.)
Chugai Pharmaceutical Co.,Ltd.

From: Eric Pettersen <pett at cgl.ucsf.edu>
Sent: Tuesday, May 18, 2021 2:11 AM
To: Fukami,Takaaki 深海隆明(タンパク質科学研究部2G) <fukamitka at chugai-pharm.co.jp>
Cc: ChimeraX Users Help <chimerax-users at cgl.ucsf.edu>
Subject: Re: [chimerax-users] Proxy setting with user authentication

If your proxy does require a username and password, instead of just putting the host name in the "Host" field, you will have to put username:password at host.

--Eric

On May 17, 2021, at 10:02 AM, Eric Pettersen <pett at cgl.ucsf.edu<mailto:pett at cgl.ucsf.edu>> wrote:

Hi Takaaki,
  You inform ChimeraX about your proxy settings by using the ChimeraX Settings dialog (on Linux that would be under Favorites...→Settings) and going to the "Web Access" tab of that dialog.  You will be able to fill in the proxy information there.  Then click 'Save'.  Let me know if you have any problems.

--Eric

  Eric Pettersen
  UCSF Computer Graphics Lab

On May 17, 2021, at 4:18 AM, <fukamitka at chugai-pharm.co.jp<mailto:fukamitka at chugai-pharm.co.jp>> <fukamitka at chugai-pharm.co.jp<mailto:fukamitka at chugai-pharm.co.jp>> wrote:

Dear ChimeraX developers,

I’m a new user of ChimeraX.
How can I set username/password for HTTP/HTTPS proxy settings?
Our firewall is strict and requires username/password authentication.

I’d like to install ISOLDE (we purchased the license), but I can’t install it via Tools > More Tools...
I downloaded the .whl file for ISOLDE from the ChimeraX Toolshed page (https://cxtoolshed.rbvi.ucsf.edu/apps/chimeraxisolde<https://jpn01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcxtoolshed.rbvi.ucsf.edu%2Fapps%2Fchimeraxisolde&data=04%7C01%7Cfukamitka%40chugai-pharm.co.jp%7C7ecb50ced4ea4f5b96d908d91956c44b%7Ca5bd0d07eca34fda98217c858c9deb8a%7C0%7C0%7C637568682793207475%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=NajP0LtRpviYl8Ix4DhKE%2BNPFQR1bmTs3cMDm3lUP4M%3D&reserved=0>),
and tried the command below in ChimeraX windows,
toolshed install /path/to/the/ChimeraX_ISOLDE-1.2.0-cp38-cp38-manylinux_2_17_x86_64.whl
but failed during pip install (by SSLError, which means proxy was not set correctly).
Enviroment variables http_proxy and https_proxy were set when ChimeraX executed, but not worked.

Best regards,

Takaaki

-----
Dr. Takaaki Fukami (mailto:fukamitka at chugai-pharm.co.jp)
Protein Science Dept. (Protein Science 2 Gr.)
Chugai Pharmaceutical Co.,Ltd.
200 Kajiwara, Kamakura, 247-8530 Japan
Tel: +81-467-47-6178

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