[chimerax-users] Colour residues by local resolution estimation map

Oliver Clarke olibclarke at gmail.com
Wed May 19 06:58:47 PDT 2021


Hi Yiannis,

I am not sure whether this is possible in ChimeraX yet, but you can do this in Chimera using a combination of `Values at Atom Positions` and `Render by Attribute`.

https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/density/density.html <https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/density/density.html>

https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/render/render.html <https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/render/render.html>

Cheers
Oli

> On May 19, 2021, at 9:22 AM, Ioannis Skalidis <johnskalidis at gmail.com> wrote:
> 
> Dear all,
> 
> I am trying to color a protein model based on the local resolution of the corresponding map. I can color the overall surface of the model, but not the residues themselves. Is there a way to do this, e.g, color the model backbone somehow?
> 
> Thanks a lot for your help!
> 
> Cheers,
> Yiannis
> 
> -- 
> 
> 
> 
> Skalidis Ioannis, MSc
> Biochemistry & Cryo-EM Scientist
> PhD Candidate
> Kastritis Laboratory for Biomolecular Research
> Cryo-Electron Microscopy & Computational Structural Biology
> 
> ________________________________________________
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> Biozentrum, Room A.2.21
> IWE ZIK HALOmem NWG III
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> tel: +49 345 5524986
> web (Lab): https://blogs.urz.uni-halle.de/kastritislab/
> web (HALOmem): https://www.halomem.de/en/
> 
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