[chimerax-users] An inquiry

[Victor Ejigah]

Hi Elaine,
              I am using chimeraX for protein analysis and simulations and
recently, we have a question we want to explore by first simulating before
going to the wet lab. We want to conjugate a polymer of different molecular
weight to an antibody and thereafter determine the impact of the MW of each
polymer on the binding affinity of the mAB to its ligand. Therefore, we
want to know
1) Can we create polymers of different sizes with chimera? If not, can you
recommend alternatives?
2) What tool can we use for conjugation( assuming chimera can be of help)?
3) Can such conjugates be exported to Chimera1.5 for MD ensemble since
Chimera X does not have this feature?
I will be most glad to hear from you soon.

Kind regards,
Victor (PhD student @Howard University)
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